Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E05
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323... 128 4e-30
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 31 0.65
01_01_1184 - 9430623-9430658,9430945-9431013,9431104-9431270,943... 30 1.1
01_06_1183 - 35176780-35177266,35179631-35181093 29 2.0
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402... 29 2.6
05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912... 29 3.5
04_03_0691 - 18756812-18756883,18757453-18757590,18758017-187583... 29 3.5
11_06_0437 - 23533218-23536382 28 4.6
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 4.6
01_01_0473 - 3478660-3480338,3480507-3480609 28 6.1
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160... 27 8.0
08_02_0517 - 18087769-18088026,18088148-18088519 27 8.0
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911... 27 8.0
>06_03_0471 +
21130839-21130869,21131013-21131127,21132228-21132309,
21132444-21132648,21133237-21133296,21133420-21133472,
21133589-21133711,21133844-21133913,21134012-21134090,
21134172-21134253,21134272-21134310
Length = 312
Score = 128 bits (308), Expect = 4e-30
Identities = 67/150 (44%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
Frame = +2
Query: 119 AFRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDL 298
AFR+Y + K V + Y H N T DFV+ + + + + + I + + LN+
Sbjct: 47 AFRNYEAESER--KETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEF 104
Query: 299 VDESDPDTNLPNIVHAFQTAERIREDHPDDDWFHLIGLIHDLGKVM---AFYEEPQWCVV 469
+D+SDPD ++P I H QTAE IR+D PD+DW HL GLIHDLGKV+ +F E PQW VV
Sbjct: 105 IDDSDPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVV 164
Query: 470 GDTFAVGCKWGKSIVYGDDSFKYNPDTYYP 559
GDTF VGC + + V+ FK NPD P
Sbjct: 165 GDTFPVGCAFDECNVH-FKYFKENPDYLNP 193
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 396 STSLDSFTISERLWPSTRSRNGAWSVTHSPSDVNGVN 506
S L S + S +WP+ +++ G W SP+ G+N
Sbjct: 270 SMLLGSISSSGFIWPALQAKQGEWYTDPSPTSFKGIN 306
>01_01_1184 -
9430623-9430658,9430945-9431013,9431104-9431270,
9431596-9431693,9431790-9431929,9432911-9433120,
9434314-9434832
Length = 412
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -1
Query: 163 HLDRIVFIHRVITERFQRFVLVFLLWSE 80
HLDR +++H+V+T R +++ L++SE
Sbjct: 164 HLDRYLYVHKVLTCRLGSALMLSLIYSE 191
>01_06_1183 - 35176780-35177266,35179631-35181093
Length = 649
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 424 EIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQ 326
EIV E +E I+V + + DP C E + ++ Q
Sbjct: 188 EIVPERERLEEILVEVGINDPASCSEEIESLEQ 220
>12_01_0988 -
10039187-10039243,10039356-10039649,10039838-10040202,
10042916-10042931
Length = 243
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 224 KMDNWLKFNHFKST-IKDALIK--LNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDDW 394
K+ NW K N +KDA+ + ++D +D T L NI +F+ A + ++W
Sbjct: 72 KLANWEKSNRMCLIYVKDAISPEVIGGIIDSNDIKTYLANIEESFEFAPEAHANTLKEEW 131
>05_03_0169 -
9123684-9124823,9125408-9125594,9126379-9126476,
9127124-9127182,9128748-9129081
Length = 605
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 432 LWPSTRSRNGAWSVTHSPSDVNGVN 506
L+P +++G W T SPS+++G+N
Sbjct: 199 LYPYLETKHGEWYQTDSPSNLDGLN 223
>04_03_0691 -
18756812-18756883,18757453-18757590,18758017-18758308,
18758485-18758648,18759159-18759434,18759512-18759718,
18760303-18760475,18761978-18762139,18762561-18762720
Length = 547
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 391 IIVRMV-LTDPLRCLESVHNVRQVSVRI-GFIDQIVQLDESILYCR 260
I+VRM PL+CLE+V +Q R GF + ++ ++CR
Sbjct: 499 ILVRMPKCVHPLKCLETVTREKQKQTRTPGFCSNQFSVSKTWIFCR 544
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 380 PDDDWF-HLIGLIHDLGKVMAFYEEPQWCVVGD 475
PD F H+ IHDL + +AF+ Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 337 NVRQVSVRIGFIDQIVQLDESILYCRLEVVEFQPIIHFTLDEINC 203
N ++++ IG + +++ L+E Y L+ ++ I+H L EINC
Sbjct: 693 NNQKLTKCIGSVLKVLHLEEK--YESLDQMKLDSIVHLILHEINC 735
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 242 KFNHFKSTIKDALIKLNDLVDESDPD 319
K++H KST++ +IKL D+V + D
Sbjct: 264 KYSHDKSTLETEIIKLQDIVKNFEGD 289
>10_01_0132 -
1601421-1601657,1601761-1601922,1602812-1603721,
1604587-1604651,1604704-1604746,1605086-1605128,
1605874-1605955,1606270-1606464,1606567-1606721,
1611207-1611435,1611538-1611693,1612539-1613476,
1614946-1614967
Length = 1078
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 101 EDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMT-VDFVKGKMDNWLKFNHFKSTI 268
ED PLE D++DP+ RV K + D + MT +++ D+W + F+ +
Sbjct: 530 EDDPLEVTCLEDDDDDDPLVDRVEKFFRD--SGMTSLEYPAAFYDSWRVLSEFQDLL 584
>08_02_0517 - 18087769-18088026,18088148-18088519
Length = 209
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +2
Query: 218 KGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPD 385
+G +D ++ ++H IK+ K+ + + P+ V +F+ ER+ E+ P+
Sbjct: 109 EGPLDEFIYYHHEMVLIKEFPGKVILFCEVAPPEGGETPFVPSFRVTERVMEEFPE 164
>05_03_0168 -
9116648-9117775,9118699-9118885,9119724-9119821,
9119948-9120114,9122242-9122578
Length = 638
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 432 LWPSTRSRNGAWSVTHSPSDVNGVN 506
L+P ++ G W T SP+ +NG N
Sbjct: 236 LYPFLETKRGQWYQTDSPTSLNGQN 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,516
Number of Sequences: 37544
Number of extensions: 340659
Number of successful extensions: 907
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -