Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E05
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31) 179 1e-45
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.041
SB_14324| Best HMM Match : Ank (HMM E-Value=1.7e-28) 30 1.2
SB_26203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_57338| Best HMM Match : VWA (HMM E-Value=1.2) 29 2.0
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 29 2.7
SB_11581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38) 29 3.6
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 28 6.2
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10) 28 6.2
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 27 8.2
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31)
Length = 203
Score = 179 bits (436), Expect = 1e-45
Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 12/181 (6%)
Frame = +2
Query: 53 VSVMDPSLLLRPEEKYE------------DKPLEAFRDYTVDENDPIKMRVRKTYYDMHT 196
+ + DPS L RPEE+Y+ DK E FR+Y ++ + VR+TY MH
Sbjct: 24 IVLTDPSQLHRPEEQYQEFNKKKKEISRTDKSKEEFRNYNINLQTDV---VRETYKLMHK 80
Query: 197 NMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIRED 376
TV+FV+ K+ W + + T+ +A+ L+ LVDESDPDT+LPN HAFQTAERIR D
Sbjct: 81 YQTVEFVQQKIKKWGSLSKTEMTVMEAVFMLDALVDESDPDTDLPNSAHAFQTAERIRAD 140
Query: 377 HPDDDWFHLIGLIHDLGKVMAFYEEPQWCVVGDTFAVGCKWGKSIVYGDDSFKYNPDTYY 556
HPD DWF L+GL+HD+GKV+A + +PQWCVVGDTF VGC++ V+ ++F+ NPDT
Sbjct: 141 HPDKDWFQLVGLLHDMGKVLALWGDPQWCVVGDTFPVGCQFSNKNVF-PETFEDNPDTKV 199
Query: 557 P 559
P
Sbjct: 200 P 200
>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 128 DYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDE 307
+Y + NDP+ + + +T+ D+V + D+W+ F+H D K+N+ +
Sbjct: 259 NYGLSTNDPLSIGILLIILVFNTSNNNDYVSDESDDWVPFDH------DGRRKINNNYES 312
Query: 308 SDPDTN-LPNIVHAFQTAERIREDHP 382
D DT+ L ++ E + D P
Sbjct: 313 YDSDTSMLSDLDGESDEEEEVNRDAP 338
>SB_14324| Best HMM Match : Ank (HMM E-Value=1.7e-28)
Length = 631
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/94 (22%), Positives = 43/94 (45%)
Frame = +2
Query: 56 SVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDN 235
++ P+L +RP +KY+ + A R Y ++ P + + D + +K +
Sbjct: 510 ALQKPTLEIRPNQKYDW--ITAIRAYGIELKSPPEPSPHMSAGDPLKDDATMVLKQQR-- 565
Query: 236 WLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNI 337
++ +STI + LN + D+ T +PN+
Sbjct: 566 -MRIKELQSTINQQTVLLNSICDQLQKLTGVPNM 598
>SB_26203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 136 RVITERFQRFVLVFLLWSE*KRRVHNGHR 50
R++ F RFV FL W + K+ +GHR
Sbjct: 56 RIVVHYFLRFVFFFLGWWKVKQNARDGHR 84
>SB_57338| Best HMM Match : VWA (HMM E-Value=1.2)
Length = 333
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 232 IHFTLDEINCHVRVHIIIGFTDSHLDRIVFIHRVITERFQ 113
IH T NC R H G TD H VF HR++TE F+
Sbjct: 260 IHCT--SFNCDDRFHRCQGDTDGH----VFAHRLLTEGFR 293
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +2
Query: 101 EDKPLEAFRDYTVDE--NDPIKMRVRKTYYD---MHTNMTVDFVKGKMDNWLKFNHFKST 265
E K L A +++ ND +K+++R D N + ++ K +N L ++
Sbjct: 1209 EQKKLNANYQKDIEDLLNDIVKLKMRGMDDDGTEEMENQIREELEVKQENKLLQEQVENL 1268
Query: 266 IKDALIKLNDLVDESDPDTNLP----NIVHAFQTAERIREDHPDDDW 394
IKD + D D+S N+ + + ++ E+ PDDDW
Sbjct: 1269 IKDNALLQKDNTDKSTEIQNMELEIKRLENIVSDLQKELENRPDDDW 1315
>SB_11581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 170 RKTYYDMHTNMTVDFVKGKMDNWLKFNH 253
R+ Y + +TN D+V + D+W+ F+H
Sbjct: 5 RRRYRNTNTNNKNDYVSDESDDWVPFDH 32
>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
Length = 1523
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 140 PPCNHGTLPTVCPRIS 93
PPC+ GTLP +C + S
Sbjct: 33 PPCSEGTLPEICKKTS 48
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 402 SLDSFTISERLWPSTRSRNGA--WSVTHSPS 488
S +SFTI+ LWPS+ N W++ SP+
Sbjct: 397 SNNSFTITSPLWPSSPPSNTTCNWAIESSPN 427
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 182 YDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAE 361
YD + N D V+ + F+ T+ A IK +DE ++ PN + E
Sbjct: 307 YDTNKNDEGDAVQHPVHTTTNSVCFQHTLHTAKIKAGH-IDEPTHSSSFPNRLQGTAQVE 365
Query: 362 RIREDHPDD 388
R+ + P++
Sbjct: 366 RLEQQQPEE 374
>SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)
Length = 262
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/73 (23%), Positives = 27/73 (36%)
Frame = +2
Query: 32 KIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVD 211
K PE + DPS + E + D + E P + V T M
Sbjct: 105 KRTPEKRIQKSDPSPGILSNEDFTDLDYNTMMASLIGEEQPPLIAVSDTPAIMEVESLCS 164
Query: 212 FVKGKMDNWLKFN 250
++G +D +K+N
Sbjct: 165 LIRGGVDEDVKYN 177
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 257 KSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDD 391
+S I L K+ + +D+ + +LP +VH E IR P D
Sbjct: 155 QSQIDSTLEKVGEKMDKYAKEADLPRLVHGSCLVEWIRHSVPKGD 199
>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.5 bits (58), Expect = 8.2
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Frame = +2
Query: 38 KPESPVSVMDPSLLLRPEEKYEDKPLEAFRD-YTVDENDPIKMRVRK--TYY----DMHT 196
KP SP S+ S + + E K + F D Y ++ D ++ + K YY D +
Sbjct: 140 KP-SPSSIDFDSKKVAEYQSSEGKKIFVFDDLYDKEDLDNLRAHILKYGVYYFDDSDDNE 198
Query: 197 NMTVDFVKG-KMDNWLKFNHFKSTIKDAL-IKLNDLVDESDPDTNLPNIVHAFQTAERIR 370
+ V ++ G +DN+LK + T + A + ++ D NL I +A T RI
Sbjct: 199 SDNVQWIAGFNIDNYLKSRFWNITHRVATHVSGSNKWFPYDISCNL--IRYADHT--RIH 254
Query: 371 ED--HPDDDWFHLIGLIHDLGK 430
D +D+W HLI L D+ K
Sbjct: 255 HDCNQNEDEWTHLIYLNPDMEK 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,791,120
Number of Sequences: 59808
Number of extensions: 419221
Number of successful extensions: 1333
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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