Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E04
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    32   0.30 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    32   0.30 
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 416 TPEYNPVCGSDXQTYKNQARL 478
           T E+  VCGSD +TY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489



 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 392 KCAENCISTPEYNPVCGSDXQTYKNQARL 478
           KC+E C     +  VCG+D +TY N+  L
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNECFL 344


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 416 TPEYNPVCGSDXQTYKNQARL 478
           T E+  VCGSD +TY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497



 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 392 KCAENCISTPEYNPVCGSDXQTYKNQARL 478
           KC+E C     +  VCG+D +TY N+  L
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNECFL 352


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 386 IEKCAENCISTPEYNPVCGSDXQ-TYKNQARLFCA 487
           +E C+ENC     +NPVC  D + T+ +     CA
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCA 476


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 380 QTIEKCAENCISTPEYNPVCGSDXQTYKNQARLFCAP 490
           Q ++ C    + T E NP   S+   YKN +R+ C P
Sbjct: 284 QCVDACETETV-TDEANPCKFSNAAKYKNGSRIICGP 319


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 377 RQTIEKCAENCISTPEYNPVCGSDXQTYKN 466
           R + + C  NC +T E++PVC ++   Y+N
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRN 137


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 389 EKCAENCISTPEYNPVCGSDXQTYKN 466
           EKC+       E+NPVC    QT+ N
Sbjct: 117 EKCSCTAPCPTEWNPVCDKKGQTHAN 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,807
Number of Sequences: 27780
Number of extensions: 290159
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)