Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E03
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    28   0.69 
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   2.1  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   4.8  
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   4.8  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   6.4  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   8.4  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   8.4  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   8.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.4  

>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 58  GNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRL-MHVYAEKSKESAT 213
           GN+ D  +   ++  +I Q    +A +TF P LEEQ    + VYA+K  E  T
Sbjct: 116 GNKEDELRVQKEIQALIRQ---ITATVTFLPQLEEQCTFNVLVYADKDSEVPT 165


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 284 PSFGRSTSYCTTN*PKTPSPAFSPVADSFDFSAYTC 177
           P F RST YCT       +P F    D  +   + C
Sbjct: 445 PRFARSTPYCTDIAKSMEAPIFHVNGDDVEAVTFIC 480


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 67  VDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMHVYAEKSKESATGENAGEGV 237
           V+ATK +  ++NV+       A+     D++  KRL  +  EK   S   E A E V
Sbjct: 108 VEATKGNPNIANVVYDEHYVYALTPGREDMKNVKRLAEI-GEKVDFSMPCEEAIEKV 163


>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 218 SPVADSFDFSAYTCINRFCSSKSGENVMTAEVPSL*MITFDI*ASSFVA-STSFPVLISG 42
           SP  D+F    Y  + RF  S     +M A+  +     +D+ A  + A    FP+ ++ 
Sbjct: 87  SPDNDAFIKRKYATVQRFRMSSMRMGLMMAQQGTTMPAKYDVPAEEYGAFGGGFPIKLTS 146

Query: 41  TRNSEIFAVSL 9
                +F +S+
Sbjct: 147 GIQIGVFCISV 157


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 346 NKYVVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFS 465
           N Y + V+D       +  E LKE   +  N    GDY S
Sbjct: 307 NNYGLVVIDGDNVTISKNYETLKEKYASAANYTGDGDYSS 346


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 452 PGFSSFNIVYIASFNCSILRPDMDPDVSRTKTTYLLS 342
           PG  +     ++SF+   LRP  D  VS+    YL S
Sbjct: 40  PGLGTSIPSSVSSFHHQTLRPSSDASVSQFSMDYLQS 76


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 121 GTSAVITFSPDLEEQKRLMHVYAEKSKE 204
           G   ++ +  + +++ + +HVY EKSK+
Sbjct: 734 GCEPILQYVYEAKDKHKSLHVYLEKSKD 761


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 289 FVHLSVDLHHIVQQIDLKHLLP 224
           FV + +DL H+V    LKH LP
Sbjct: 167 FVDIKIDLQHVVS--SLKHNLP 186


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/59 (20%), Positives = 26/59 (44%)
 Frame = +1

Query: 46   EIRTGNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMHVYAEKSKESATGEN 222
            E +  +  ++ + DA+ +N  +  EG+        DL +     ++  E   E+  G+N
Sbjct: 1111 EFKVSSSNNSKQTDAEETNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKSETVEGDN 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,223
Number of Sequences: 5004
Number of extensions: 41168
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)