Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E03
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy cha... 49 2e-06
At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger) fa... 43 1e-04
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 42 2e-04
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha... 38 0.005
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 32 0.19
At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD, chlor... 31 0.44
At5g53930.1 68418.m06710 expressed protein 29 2.3
At4g05145.1 68417.m00771 hypothetical protein 29 2.3
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont... 27 5.4
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote... 27 5.4
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 27 5.4
At4g14030.1 68417.m02168 selenium-binding protein, putative cont... 27 5.4
At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /... 27 5.4
At3g20290.1 68416.m02571 calcium-binding EF hand family protein ... 27 7.1
At4g14040.1 68417.m02169 selenium-binding protein, putative cont... 27 9.4
At4g01280.1 68417.m00169 myb family transcription factor contain... 27 9.4
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 27 9.4
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 27 9.4
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 27 9.4
At2g15600.1 68415.m01787 hypothetical protein 27 9.4
>At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy
chain-related similar to SP|Q61704 Inter-alpha-trypsin
inhibitor heavy chain H3 precursor {Mus musculus};
contains Pfam profile PF00092: von Willebrand factor
type A domain
Length = 754
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 483
VVFV+D S SM+G+ +E +K A+ T L++L+PGD F+II F +
Sbjct: 329 VVFVVDISKSMTGKPLEDVKNAISTALSKLDPGDSFNIITFSN 371
>At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 704
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 483
+V VLD SGSM+G K+ LK AM ++ L P D S+I F S
Sbjct: 253 LVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPFDRLSVISFSS 295
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFESI 486
++ VLD SGSM G KME +K AM ++ L D S+I F S+
Sbjct: 205 LITVLDVSGSMDGVKMELMKNAMSFVIQNLGETDRLSVISFSSM 248
>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
family protein very low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 692
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 483
+V VLD SGSM+G K+ LK AM ++ L D S+I F S
Sbjct: 254 LVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSS 296
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 483
+V VLD SG SG K+E LK+ M +L+ L D SII F S
Sbjct: 303 LVAVLDVSGRNSGGKLEMLKQTMRIVLSNLREMDRLSIIAFSS 345
>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 676
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 483
+V VLD SGSM G K+ LK AM ++ L D S+I F S
Sbjct: 245 LVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSS 287
>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 675
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFES 483
+V VLD SGSM G K+ LK AM ++ L D S+I F S
Sbjct: 244 LVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSS 286
>At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy
chain-related low similarity to Inter-alpha-inhibitor H4
heavy chain [Rattus norvegicus] GI:2292988; contains
Pfam profile PF00092: von Willebrand factor type A
domain
Length = 758
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDFESII 489
VVFV+D S SM + +E +K+A+ L +L D F+II F I
Sbjct: 329 VVFVIDISASMKWKPLEDVKKALLECLAKLQAEDVFNIIAFNDEI 373
>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 327
Score = 32.3 bits (70), Expect = 0.19
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 49 IRTGNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRL--MHVYAEKSKESATGEN 222
I++G+++DA DD QM + + S + + +LE + +L +H Y EK +E T
Sbjct: 37 IQSGSDIDARSDDPQMCGLYV-----SDIYEYLRELEVKPKLRPLHDYIEKIQEDITPSK 91
Query: 223 AGEGVLGQFVVQ 258
GVL ++V+
Sbjct: 92 --RGVLVDWLVE 101
>At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLD) similar to Mg-chelatase SP|O24133 from
Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum
sativum]
Length = 760
Score = 31.1 bits (67), Expect = 0.44
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 355 VVFVLDTSGSMSGRKMEQLKEAMYTILNE-LNPGDYFSIIDF 477
V+FV+D SGSM+ +M+ K A +L E D SII F
Sbjct: 559 VIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPF 600
>At5g53930.1 68418.m06710 expressed protein
Length = 529
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +1
Query: 7 IKETANISELRVPEIRTGN--EVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMH 180
+ + + I++ V + G ++++ K ++Q +++ Q+ SAV S DLE ++++H
Sbjct: 295 VTQKSGIAKKEVSSVSEGEPMQIESEKVESQDHDLMEQKLCDSAV---SKDLENSEKILH 351
Query: 181 VYAEKSKESATGENAGE 231
V K +A +A +
Sbjct: 352 VINVKESGTALANSASQ 368
>At4g05145.1 68417.m00771 hypothetical protein
Length = 219
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 195 FLRIYVHQSFLLF*IWRERNDRR 127
FLR YV Q+ ++ +WRERN RR
Sbjct: 152 FLRRYVFQA-TIYIVWRERNGRR 173
>At5g10660.1 68418.m01234 calmodulin-binding protein-related
contains weak similarity to calmodulin-binding proteins
Length = 407
Score = 27.5 bits (58), Expect = 5.4
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Frame = +1
Query: 10 KETANISELRVPE-IRTGN-----EVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKR 171
K T I E + PE I N EV DD + S + + + EE+K
Sbjct: 264 KSTEQIEEPKEPENIEENNSEEEEEVKKKSDDEENSETVATTTDMNEAVNVEESKEEEKE 323
Query: 172 LMHVYAEKSKESATGENAGE 231
V E+ + SA E E
Sbjct: 324 EAEVKEEEGESSAAKEETTE 343
>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 559
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 311 KYPSFTRICPSFGRSTSYCTTN*PKTPSPAFSPVADSFDFSA 186
K FT S S++ +TN P P F P +D FD+ A
Sbjct: 42 KSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYA 83
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 311 KYPSFTRICPSFGRSTSYCTTN*PKTPSPAFSPVADSFDFSA 186
K FT S S++ +TN P P F P +D FD+ A
Sbjct: 42 KSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYA 83
>At4g14030.1 68417.m02168 selenium-binding protein, putative
contains Pfam profile PF05694: 56kDa selenium binding
protein (SBP56); identical to Putative selenium-binding
protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
similar to selenium binding protein (GI:15485232)
[Arabidopsis thaliana]; identical to cDNA from partial
mRNA for selenium binding protein (sbp gene) GI:15485231
Length = 490
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 241 GQFVVQYDVDRPKDGQILVNDGYFVHF-FAPDLPPL 345
G ++Q DVD K G + +N +FV F PD P L
Sbjct: 439 GSHIIQIDVDTEKGG-LTINPDFFVDFGDEPDGPSL 473
>At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 417
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 289 FVHLSVDLHHIVQQIDLKHLLPHFP 215
FV +SVD + +V Q +L H++ H P
Sbjct: 166 FVSISVDDYPLVTQDELLHIMSHLP 190
>At3g20290.1 68416.m02571 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4 and {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 545
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 253 VQYDVDRPKDGQILVNDGYFVHFFAPDLP-PLNKYVVFVLDTSGSMSGRKMEQLKEAMYT 429
V D P G + F +P PL ++V FV DT G +SG K + +T
Sbjct: 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHVTFV-DTPGVLSGEKQRTQRAYDFT 311
>At4g14040.1 68417.m02169 selenium-binding protein, putative
contains Pfam profile PF05694: 56kDa selenium binding
protein (SBP56); similar to Putative selenium-binding
protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
similar to selenium binding protein (GI:15485232)
[Arabidopsis thaliana]
Length = 487
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 241 GQFVVQYDVDRPKDGQILVNDGYFVHF-FAPDLPPL 345
G ++Q DVD K G + +N +FV F PD P L
Sbjct: 436 GSHIIQIDVDTDKGG-LTLNPDFFVDFGDEPDGPAL 470
>At4g01280.1 68417.m00169 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 302
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 82 DDAQMSNVIIQREGTSAVITFSPDLEEQKRLMHVYAEKS 198
D M V++ + S +T SP+ EQ+RL+ Y+ K+
Sbjct: 263 DPINMETVLLLMQNLSVNLT-SPEFAEQRRLISSYSAKA 300
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 26.6 bits (56), Expect = 9.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +1
Query: 13 ETANISELRVPEIRTGNE-----VDATKDDAQMSNVIIQREGTSAVITF-SPDLEEQ 165
ET SE +V ++R E V+A +D N++I +G +TF S DL EQ
Sbjct: 43 ETQKKSEKKVKKVRGKIEEEEEKVEAMEDGEDEKNIVIVGKGIMTNVTFDSLDLSEQ 99
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -1
Query: 403 PFYVQTWTRTCPGRRRRIC*AAVGQERRNGRN----IHRSLEFVHLSV 272
P ++ W P RR + A + R+G + +HR+L F HL+V
Sbjct: 65 PLHIAVWRNHIPIVRRLLA-AGADPDARDGESGWSSLHRALHFGHLAV 111
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -1
Query: 403 PFYVQTWTRTCPGRRRRIC*AAVGQERRNGRN----IHRSLEFVHLSV 272
P ++ W P RR + A + R+G + +HR+L F HL+V
Sbjct: 65 PLHIAVWRNHIPIVRRLLA-AGADPDARDGESGWSSLHRALHFGHLAV 111
>At2g15600.1 68415.m01787 hypothetical protein
Length = 90
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 198 RFLRIYVHQSFLLF*IWRERNDRR 127
RF+ YV Q+ + IWRERN+RR
Sbjct: 14 RFVLRYVFQN-TIHSIWRERNERR 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.134 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,469,474
Number of Sequences: 28952
Number of extensions: 214301
Number of successful extensions: 654
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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