Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E02
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 29 0.35
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 29 0.46
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 28 0.80
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 2.5
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 5.7
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 25 5.7
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 25 7.5
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 7.5
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 25 7.5
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 7.5
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 7.5
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 9.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 9.9
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 29.5 bits (63), Expect = 0.35
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 329 GGTRGRTLKLWNKQFGQYL 385
GGT RT+KLWN Q G L
Sbjct: 436 GGTADRTIKLWNTQRGSML 454
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 29.1 bits (62), Expect = 0.46
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 383 LKLESNSDSDGEHKAFGGHEHDTWRHLWYFHPVVVGSETVFFIFNRN 523
L E N D + KAF HE R L+++HP ++G+ V F+ RN
Sbjct: 119 LNYEKNYDYFKKLKAF--HES---RGLYFYHPPIIGNRPVDFLRLRN 160
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 0.80
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Frame = -1
Query: 474 WKYHRCL--HVSC-SCPPNALCSPSLSEFDSSFKYCPNCLFHNFKVRPLVPPMR-DYFPR 307
WK+ R SC +C PN + S E S +Y C + + L P R
Sbjct: 249 WKHIRIRPRQQSCKACGPNKMLSREFME-SSPKEYTTICDYVPTLSKQLAPIRRISALDL 307
Query: 306 HSI--TLPFV-FVTVRTSIAISVCTPFEFKSICISEIDKL 196
++ T P + F+ VR + +C FK+I +SE+D L
Sbjct: 308 KNLIETSPHITFLDVREPVQFGICRLPLFKNIPLSEVDSL 347
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -1
Query: 516 LKIKNTVSLPTTTGWKYHRCLHVSCSCPPNA----LCSPSLSEFDSSFK 382
LK KN T W +RCL ++ CPP A LCS ++ + +F+
Sbjct: 441 LKHKNPQVKTETLRW-LNRCLQLTDVCPPRASLETLCSLCVTLINDTFE 488
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 5.7
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = -1
Query: 486 TTTGWKYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLFHNFKVRPLVPPM-RDYFP 310
TT KY + + S P LC EF Y + F + + + RD F
Sbjct: 221 TTKKQKYEKIMEKKISTPTEVLCRGFPQEFSIYLNYTRSLRFDDKPDYAYLRKLFRDLFC 280
Query: 309 RHSITLPFVF 280
R S ++F
Sbjct: 281 RQSYEFDYMF 290
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 464 WYFHPVVVGSETVFFIFNRNYNQALK 541
+YFHP V F+++R NQA K
Sbjct: 265 YYFHPFTVLETDENFLYSRPLNQAEK 290
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 7.5
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 268 AYGDKNEWESDRMSWKIIPH 327
A D N+W+ +R++W++ H
Sbjct: 208 AQNDGNDWKINRVTWRLEEH 227
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 181 LGEQVKFINLRDANALKLEWGTDRDGDRGAYGDKNEWESDRMSWK 315
L + + +N +A E G+D D ++ + +E++ D +W+
Sbjct: 63 LDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWE 107
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 7.5
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +1
Query: 295 SDRMSWKIIPHWW 333
+ R+++K +PHWW
Sbjct: 92 TSRITYKNVPHWW 104
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 523 VSVENKEHRLTPNYHWVEVPQMSPCVVFVSSK 428
+++ E L NY + +VP S CV +S +
Sbjct: 49 IAITRSESNLQSNYKYDQVPMYSICVFCLSGQ 80
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 385 QILSELLVPQFQSTPSGSTNEGLFSKT 305
++LSE V + Q+ P N+GL KT
Sbjct: 558 RLLSEAFVEKIQNGPKHLMNKGLIEKT 584
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 395 SNSDSDGEHKAFGGHEHDTWRH 460
SNSDSD H A H + +H
Sbjct: 67 SNSDSDSPHHASNPHPNSRQKH 88
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 350 LKLWNKQFGQYLKLESNSD 406
+ WN +G+YL L N+D
Sbjct: 876 INFWNVSYGKYLILTGNTD 894
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 392 ESNSDSDGEHKAFGGHEHDTWRHLWYFHPV 481
E NSDS AF E +W+H P+
Sbjct: 150 EYNSDSSSTDPAFELKEDQSWKHSSILRPL 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,622
Number of Sequences: 5004
Number of extensions: 48953
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -