Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_E02
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016... 31 0.47
01_06_1341 - 36434098-36436080 31 0.47
03_05_0274 - 22626779-22627423 30 1.1
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 30 1.1
11_04_0320 + 16354122-16354226,16354652-16356859 29 2.5
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 29 2.5
08_02_0873 + 22100124-22100810 29 3.3
04_01_0212 - 2654691-2656976 29 3.3
10_08_0365 + 17224777-17224852,17224949-17224989,17225175-172252... 28 4.4
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502... 28 4.4
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 28 4.4
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875... 28 4.4
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 28 5.8
>04_04_0503 -
25701050-25701343,25701431-25701528,25701629-25701689,
25701772-25701842,25701922-25702048,25702160-25702244,
25702346-25702409,25702732-25702793,25703214-25703284,
25703700-25703795,25703960-25704108,25704196-25704265,
25704483-25704523,25704668-25704743
Length = 454
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = -1
Query: 471 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLFHNFKVRPLVPPM-RDYFPRHSIT 295
KY R P LC SEF S F YC + F + + + RD F R
Sbjct: 224 KYDRISEKKMLTPVEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKKLFRDLFIREGYQ 283
Query: 294 LPFVF 280
L +VF
Sbjct: 284 LDYVF 288
>01_06_1341 - 36434098-36436080
Length = 660
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +1
Query: 10 ITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPIH 165
+ L N GRGEVIR+ N L E +V + K + EI IVRD H
Sbjct: 598 VAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAER-EI-IVRDVNRFH 647
>03_05_0274 - 22626779-22627423
Length = 214
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 404 DSDGEHKAFGGHEHD-TWRHLWYF 472
D+D EH +GGH +WR LW F
Sbjct: 71 DADDEHLYYGGHAPPFSWRKLWLF 94
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -1
Query: 471 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLFHNFKVRPLVPP-MRDYFPRHSIT 295
KY + S P LC EF S F YC + F V +RD F R
Sbjct: 224 KYDKICEKKISTPIEVLCKSCPVEFASYFHYCHSLTFDQRPDYAFVKRLLRDLFTRQVYE 283
Query: 294 LPFVF 280
+VF
Sbjct: 284 FDYVF 288
>11_04_0320 + 16354122-16354226,16354652-16356859
Length = 770
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 1 AARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPIHFRWIL 180
AA +ELK +G E L++N ++ + V KL+++ ++GI+RD WI
Sbjct: 584 AADKLLELKPKGI-ETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDR-----SWIT 637
Query: 181 LGEQVKFINLRD 216
+ ++V F D
Sbjct: 638 IKDKVYFFRAND 649
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 262 RGAYGDKNEWESDRMSWKIIPHWWNQ-RAYFEIVEQAIRTIFE 387
+GA+ D ++E D +I+P W++ R +++VE + +++
Sbjct: 41 KGAFIDNLQYEHDAEEQEILPKTWDENRTLYKVVEMELSLMYD 83
>08_02_0873 + 22100124-22100810
Length = 228
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 471 KYHRCLHVSCSCPPNALCSPSL 406
K H CLH++C C A+C P L
Sbjct: 207 KSHGCLHITCRC---AICDPRL 225
>04_01_0212 - 2654691-2656976
Length = 761
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/43 (23%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 262 RGAYGDKNEWESDRMSWKIIPHWWNQ-RAYFEIVEQAIRTIFE 387
+GA+ D ++E D +I+P W++ + +++VE + +++
Sbjct: 206 KGAFIDNLQYEHDAQQQEILPKTWDENKTLYKVVEMELSLMYD 248
>10_08_0365 +
17224777-17224852,17224949-17224989,17225175-17225244,
17225338-17225486,17225940-17226035,17226481-17226551,
17227077-17227138,17227311-17227374,17227463-17227547,
17227631-17227757,17228241-17228374,17228808-17229122
Length = 429
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 471 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLFHN 355
KY R P LC SEF S F YC + F +
Sbjct: 224 KYDRISEKKMLTPAEVLCKSYPSEFTSYFHYCRSLRFED 262
>04_04_0721 -
27549212-27549646,27549739-27549962,27550074-27550227,
27568477-27568821,27568899-27569152,27569257-27569383
Length = 512
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 333 PPMRDYFPRHSITLPFVFVTVRTSIAISVCTPFE 232
P +R YF T FVF+ V ++I+ + TP E
Sbjct: 267 PALRAYFAEFFSTFLFVFIAVGSTISARMLTPDE 300
>02_05_1170 +
34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = -1
Query: 471 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLFHNFKVRPLVPPM-RDYFPRHSIT 295
KY + P LC SEF S F YC + F + + + RD F R
Sbjct: 224 KYDKISEKKMLTPVEVLCKSYPSEFISYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQ 283
Query: 294 LPFVF 280
+VF
Sbjct: 284 FDYVF 288
>02_04_0657 +
24786717-24786924,24786925-24786965,24787379-24787521,
24787597-24787774,24788054-24788123,24788197-24788345,
24788491-24788586,24789213-24789283,24789879-24789940,
24790175-24790238,24790326-24790410,24790515-24790641,
24790714-24790775,24790863-24790923,24790987-24791147,
24791355-24791648
Length = 623
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = -1
Query: 471 KYHRCLHVSCSCPPNALCSPSLSEFDSSFKYCPNCLFHNFKVRPLVPPM-RDYFPRHSIT 295
KY + P LC +EF S F YC + F + + + RD F R
Sbjct: 375 KYDKISEKKMLTPVEVLCKSYPTEFISYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQ 434
Query: 294 LPFVF 280
L ++F
Sbjct: 435 LDYIF 439
>08_01_0509 +
4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +2
Query: 260 IEVRTVTKTNGRVIECLGK*SLIGGTRGRTLKLWNKQFGQYLKLESNSDSDGEH 421
+EVRT+ TNGR+I C + G R L K+ G L+ E+ S EH
Sbjct: 741 LEVRTLCGTNGRIIICGNQ----GFRSLRYFSLRIKRCGTMLEFEAGSMPKLEH 790
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,841
Number of Sequences: 37544
Number of extensions: 308690
Number of successful extensions: 909
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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