Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E02
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)                  30   1.5  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)               27   7.8  
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)
          Length = 435

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 82  SKRNVVDYAYKLVRKGEIGIVRDYFPIHFRWILLGEQVKFIN 207
           S R+ +  A K  + G+ G+V+DY  + F   +LGE + FIN
Sbjct: 64  SPRSRISRAGKQPQTGKAGLVKDYGDV-FTLRILGESIVFIN 104


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 497  SHSQLPLGGSTTDVSMCRVRVLQTLYVHRHCRSLILVSNIVRIACSTISKY 345
            +H +     ST     CR      +YVH H RS    S ++  AC ++  Y
Sbjct: 1716 THPRSTTSPSTVLARACRGHEYTRVYVHTHPRSTTSPSTVLARACESMRGY 1766


>SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 370 LLVPQFQSTPSGSTNEGLFSKTFYHSPIRFCHRTHLYRH 254
           L +P  Q TPS   ++      F+H+P  +   + L+ H
Sbjct: 89  LSLPSSQPTPSSPHHQKQSHHHFHHNPYHYLRHSQLHHH 127


>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
          Length = 473

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 486 TTTGWKYHRCLHVSCSCPPNALCSPSLSEFDSSFKYC 376
           TT   ++H C H + S P  +L +P     D+ + +C
Sbjct: 48  TTADTRHHHCRHPAPSLPAPSLPAPGTITADTWYHHC 84


>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 133 IGIVRDYFPIHFRWILLGEQVKFINLRDANALKLEWGTDRDGDRGAYGDKNEWESDRM 306
           +G V +YF I F + +  EQV F N+ DA      + TD+ G    + +  E   D++
Sbjct: 120 VGQVLEYFSIDFEYSVRLEQVSFNNM-DARETDF-YSTDQRGFYNIFNETVETFKDKI 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,348
Number of Sequences: 59808
Number of extensions: 353896
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)