Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E02
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.68 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 196 KFINLRDANALKLEWGTDRDGDRGAYGDKNEWESD 300
           +++ L +   + LEWG    GD       +EW+SD
Sbjct: 173 QYLRLLEVPQINLEWGEGSSGD----DLSSEWDSD 203


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 364 VPQFQSTPSGSTNEGLFSKTF 302
           +P   ST + ++ +GLFSK F
Sbjct: 675 LPSLPSTLTKNSKQGLFSKLF 695


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 208 LRDANALKLEWGTDRDGDRGAYGDKNEWESD 300
           LRD N + L      DG  G  GD++   +D
Sbjct: 183 LRDINDIGLNRRDSDDGSDGNDGDESSCRAD 213


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = -1

Query: 444  CSCPPNALCSPSLSEFDSSFKYCPNCLFHNFKVRPLVPPMR 322
            C  PP    +  LS      + CP   FH    R  + P +
Sbjct: 1701 CPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFREEMDPSK 1741


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 339 LVPPMRDYFPRHSITLPFVFVTVRTSIAISVC 244
           ++PP     P     L F  + V  SI I+VC
Sbjct: 301 IIPPTSLAIPLLGKYLLFTMILVTLSIWITVC 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,600
Number of Sequences: 438
Number of extensions: 3634
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)