Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_E01
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   1.6  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   2.1  
At4g22320.1 68417.m03227 expressed protein                             28   3.7  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   3.7  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    28   3.7  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   4.8  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   4.8  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    27   6.4  
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P...    27   8.5  
At5g07940.1 68418.m00920 expressed protein                             27   8.5  
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put...    27   8.5  

>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = +2

Query: 107 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPK 280
           E+ +K+L+  Q   +DQ+   D+  K+G  Y  EA IDN       ++   +        
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 281 YYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFL 424
             EF +F Q     +  +F +F   ++   F +   +  + L E  +L
Sbjct: 142 ALEFRLFRQHGFNVSEDVFDVF--MENCGKFDRDDIYGLISLYEASYL 187


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 155 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 265
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 83  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 244
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 32  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 184
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 394 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 248
           S SG ++E  +KV +++E   K   +   +  E+G++++L K  DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 289 LIVLGKITDSVQFQEFFNSFLIGVVI 212
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 289 LIVLGKITDSVQFQEFFNSFLIGVVI 212
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 89  VDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 253
           V A+ +E+++K L L  +  +     E+ K  KD+D+E   +    K+ VE+  K
Sbjct: 69  VKALELEKKEKELCLIDESMKAK-QSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122


>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At4g04010,
           At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
           At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
          Length = 767

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 119 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANI-DNYTNKKAVEEFLKLYRIGYLPKYYEFS 295
           K+++L  DV ++ V+     IG   D ++ + D +TN    ++ L+L ++GY  K  E++
Sbjct: 287 KIVNLVNDVYEIEVNTI---IGNPEDFKSLVPDFHTNDTEFQQVLELVKMGYRLKKTEWN 343


>At5g07940.1 68418.m00920 expressed protein
          Length = 1526

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 64  NVSLQDKRCRRSVCGAPEKGFIPFP 138
           N+S QDK C+    G  EK F+  P
Sbjct: 393 NISAQDKFCQMEDSGPAEKSFMKVP 417


>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to phosphoglycerate
           dehydrogenase, Arabidopsis thaliana, SP:O04130
          Length = 603

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 355 SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 209
           +I  Q+    S F   L E GE+ V GK+ D V       SF + V ++
Sbjct: 480 TITVQLSNVESKFASSLSESGEVKVEGKVKDGVPHLTKVGSFEVDVTLE 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,748,194
Number of Sequences: 28952
Number of extensions: 184299
Number of successful extensions: 504
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)