Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D24
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    30   0.32 
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   4.0  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   4.0  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    26   5.2  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   5.2  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   5.2  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    25   9.1  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
 Frame = +2

Query: 251 NTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHS---GAMFIDSKINVYEQFK---QDVQ 412
           N  L+++PH   N ++ N  K IG+  G  + H     A F+ S   +  Q K   QD++
Sbjct: 484 NYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDME 543

Query: 413 NTGVSEVYELPWXXXXXXXXXINDFVRSATHEAFDEIVT 529
           +        L W         + D   S     F E+VT
Sbjct: 544 SMDAEYYRSLVWILDNDITGVL-DLTFSVEDNCFGEVVT 581


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 94  SVFEEVIVRLQRWTSDESQSRNGKPFRRIW 183
           +  EE +V LQ+  S E   R+ + FR+IW
Sbjct: 6   NALEEKVVELQQSESVEVIKRHFREFRKIW 35


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +2

Query: 59  NAYGKCNDYTAHQFLKRSLYDFNA--GLVTRVNQETESHFVVSGLSAWAILSTLSFGAAE 232
           ++Y +   Y+AH   KR +  F+   GL        E  F++S      I     + A +
Sbjct: 444 DSYAEIMRYSAHDLKKRLMIRFDGEDGL-DYGGLSREFFFLLSHKMFDPIYCLFEYSAVD 502

Query: 233 ETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEH 349
                 N  L+++PH   N ++ N  + IG+  G  + H
Sbjct: 503 ------NYTLQINPHSSINPEHLNYFRFIGRVIGLAIFH 535


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 61  CIREVQRLYGSSVFEEVIVRLQRWTSDESQSRNGKPFR-RIWTISMGNSIDAIVWR 225
           C+ E   +      E++IVR + W   +S +  G  +    + +++ N +   VW+
Sbjct: 54  CVDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVLQKSVWK 109


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = +2

Query: 338 VLEHSG-AMFIDSKINVYEQFKQDVQNTGVSEVYELPWXXXXXXXXXINDFVRSATHEAF 514
           VL+++G  +F+D     Y   K ++  T +    ++PW         ++D + +     F
Sbjct: 250 VLDNAGFELFVDLLFATY-LLKTEIAETIILHPKDVPWF--------VSDVLVNDIPHLF 300

Query: 515 DEIVTPSELDGVLLVLIDALYFKGHWKGVIPLRKYWNRAH 634
           + + +    +GV  +  D   F    K VI    +W  AH
Sbjct: 301 NSLTSYFSGEGVQKLASDLAEFHAEGKIVIRPNPFWTTAH 340


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 479 NDFVRSATHEAFDE--IVTPSELDGVLLVLIDALYFKGHWKGV 601
           +D  ++A  E  +E  +  P E D V+L   DA++ KG  K +
Sbjct: 164 SDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKGQSKRI 206


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 420 PVFWTSCLNC 391
           PVFW SCL+C
Sbjct: 229 PVFWISCLSC 238


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 137 VTRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVL 262
           + R+N+  E  FV+         ST    + E+ FDE++ V+
Sbjct: 125 IVRINEIMEKQFVLQKKKNELQSSTEEIDSTEKDFDELHKVI 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,772
Number of Sequences: 5004
Number of extensions: 49522
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)