Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_D24
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 38 0.007
11_02_0014 - 7352619-7352918,7353173-7353418 36 0.020
01_06_0824 - 32243495-32244319,32244449-32244859 36 0.020
11_02_0011 - 7337618-7338496,7338596-7338991 36 0.036
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 33 0.14
01_01_1152 + 9170628-9171899 33 0.19
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 32 0.33
04_03_0991 - 21500143-21500799,21500834-21501172 30 1.3
11_01_0771 + 6453130-6454488 29 3.1
11_01_0767 + 6438648-6438809,6439146-6440000 29 4.1
08_01_0095 + 686182-686184,686440-686682,686755-687228 29 4.1
11_01_0750 - 6315126-6315896,6316371-6316784 28 7.1
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207... 27 9.4
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047... 27 9.4
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELDG-VLLVLIDALYFKGHWKGVIP 607
IN +V AT++ EI+ + G LVL++A+YFKG W P
Sbjct: 128 INKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFP 172
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELDGVL-LVLIDALYFKGHWKGVIP 607
IN++V AT++ EI+ + + LVL++A+YFKG W P
Sbjct: 90 INEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFP 134
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 36.3 bits (80), Expect = 0.020
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Frame = +2
Query: 161 ESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLR-----LHPHVCFNRKYFNILKEIGK 325
+ + VS LS A L+ L GA ET D+I L H + + ++ + G
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 326 ND---GGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVYELPWXXXXXXXXX-INDFVR 493
D G + + +++D+ + + + + V + +E + + IN++
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 494 SATHEAFDEIVTPSELDGVL-LVLIDALYFKGHWKGVIPLR 613
SAT + + +D VL +ALYFKG W+ R
Sbjct: 151 SATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDAR 191
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 35.5 bits (78), Expect = 0.036
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELD-GVLLVLIDALYFKGHWKGVIP 607
IN +V AT++ EI+ + LVL++A+YFKG W P
Sbjct: 140 INKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFP 184
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELDGVL-LVLIDALYFKGHW 592
+N +V T EI+ P +D LVL +ALYFKG W
Sbjct: 217 VNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAW 256
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELD-GVLLVLIDALYFKGHW 592
+N +V T I TP ++ LVL +ALYFKG W
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAW 508
>01_01_1152 + 9170628-9171899
Length = 423
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELDG-VLLVLIDALYFKGHW 592
+N FV AT +++ P+ +D ++VL +A++FKG W
Sbjct: 163 VNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTW 202
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELDGVL-LVLIDALYFKGHW 592
+N +V T EI+ P +D LVL +ALYFKG W
Sbjct: 9 VNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAW 48
>04_03_0991 - 21500143-21500799,21500834-21501172
Length = 331
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +2
Query: 140 TRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEI 319
T V ++ H + GL A + ++F + +TF VL V F + F KE+
Sbjct: 154 TVVVPPSDLHRHLGGLLATGEGADVTFEVSGKTFAAHRLVLAARSPV-FRAELFGPSKEL 212
Query: 320 GKNDGGVLEHSGAMFIDSKINVYE 391
G GG ++H+ D + +E
Sbjct: 213 GATTGGAVDHTAIRIDDMEARDFE 236
>11_01_0771 + 6453130-6454488
Length = 452
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELDG-VLLVLIDALYFKGHW 592
IN + R AT + +++ P + +VL +A+YFKG W
Sbjct: 177 INAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKW 216
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTP-SELDGVLLVLIDALYFKGHW 592
IN +V AT E++ P S+ V+ +A+YFKG W
Sbjct: 62 INAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEW 101
>08_01_0095 + 686182-686184,686440-686682,686755-687228
Length = 239
Score = 28.7 bits (61), Expect = 4.1
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +2
Query: 65 YGKCNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGL-SAWAILSTLSFGAAEETF 241
Y YT QF L D A +TR+ + FVV+G+ S I + L+
Sbjct: 58 YNTRRRYTPRQFADL-LADRYAAQLTRLYKAGARKFVVAGVGSMGCIPNVLAQSVESRCS 116
Query: 242 DEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHSGAMFIDS 373
E++ ++ V FN N+ +G+ DGG L + +F+D+
Sbjct: 117 PEVDALV-----VPFNA---NVRAMLGRLDGGGLPGASLVFLDN 152
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 476 INDFVRSATHEAFDEIVTPSELD-GVLLVLIDALYFKGHWKGVIPLRK 616
IN +V+ +T ++ +D LVL ALYF+G W LR+
Sbjct: 146 INSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRR 193
>06_03_0629 +
22920206-22920291,22920430-22920527,22920657-22920796,
22921596-22921626,22922025-22922128,22922439-22922560,
22922651-22923050,22923245-22923268
Length = 334
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 115 VRLQRWTSDESQSRNGKPFRRIWTISMGNSI 207
+ ++ W+S S S P R+ W +S+ N++
Sbjct: 61 IMIKLWSSGGSSSAGRAPLRKYWGVSITNTV 91
>03_06_0120 +
31804301-31804412,31804525-31804631,31804714-31804756,
31806069-31806187
Length = 126
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 264 LSTVLISSKVSSA-APNDSVDRIAHADSPDTTKWLSVS*LTLVTSPALKSYN 112
L ++ +K ++A A + AH D+ +T KW ++ +VT L +YN
Sbjct: 10 LRSLAARAKATAAPAARRRMSSSAHDDAHETAKWEKITYAGIVTCTLLAAYN 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,087,576
Number of Sequences: 37544
Number of extensions: 280130
Number of successful extensions: 620
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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