Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D24
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      36   0.036
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      34   0.084
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  30   1.4  
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      29   3.2  
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               28   5.5  
SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)                   27   9.7  
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 27   9.7  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
 Frame = +2

Query: 221 GAAEETFDEINTVLRLHPHVCFNRKYFNILKEIG---KNDGGVLEHSGA--MFIDSKINV 385
           GA  ET DE+ T +    H           KE+     N G   E S A  +F+    ++
Sbjct: 5   GARGETADEMATAMHWEGHKPMLPSKHQEHKELSVALNNPGATNEMSIANNLFLQKDFSI 64

Query: 386 YEQFKQDVQNTGVSEVYELPWXXXXXXXXX-INDFVRSATHEAFDEIVTPSELDGVL-LV 559
            ++F    Q    +++  + +          +N +V   T +   +++ P   + +  L 
Sbjct: 65  LKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLIAPGVFNMLTRLT 124

Query: 560 LIDALYFKGHW 592
           L++A+YFKG W
Sbjct: 125 LVNAIYFKGMW 135


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 4/151 (2%)
 Frame = +2

Query: 152 QETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEIG--K 325
           Q+ +++   S  S    L+    GA   T  ++         V    K+ + L+ +    
Sbjct: 24  QDGQTNLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDV--PEKFHDFLQALNASN 81

Query: 326 NDGGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVYELPWXXXXXXXX-XINDFVRSAT 502
           +DG  +  +  +F      + E+FK+  + +  +E+  + +          +N +V   T
Sbjct: 82  SDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKT 141

Query: 503 HEAFDEIVTPSELD-GVLLVLIDALYFKGHW 592
            +    ++     +   +L L++A+YFKG W
Sbjct: 142 KDKIKNLIPEGMFNKDTILCLVNAVYFKGSW 172


>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 372 ESMNIAPECSKTPPSFLPISFKILKYFLLK---HTCGCS 265
           E+   A  C K  P+FL  S+K+L YF  K   + CG S
Sbjct: 655 EAEEKAQHCLKAEPAFLEKSWKVLDYFSFKSVRNLCGAS 693


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 476 INDFVRSATHEAFDEIVTPSELDGVL-LVLIDALYFKGHWK 595
           +N +V   T     E++    ++ +  L++++A+YFKG WK
Sbjct: 101 VNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWK 141


>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 312 FKILKYFLLKHTCGC 268
           +++++YFLL H CGC
Sbjct: 166 WRLMRYFLLTHLCGC 180


>SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 312 FKILKYFLLKHTCGCSLSTVLISSKVSSAA 223
           +++++YFLL H CG S  T    S + S A
Sbjct: 98  WRLMRYFLLTHLCGISHRTWCTLSTICSDA 127


>SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)
          Length = 349

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 312 FKILKYFLLKHTCGCSLSTVL 250
           +++++YFLL H CG   S +L
Sbjct: 62  WRLMRYFLLTHLCGLESSEIL 82


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +2

Query: 476 INDFVRSATHEAFDEIVTPSELDGVLLVLIDALYFKGHWK 595
           +++F+RS   + + E+   +++DG+LL  +D  + K  +K
Sbjct: 459 VSEFLRSIKLDKYVEVFRENQIDGMLLSDMDETFLKDVFK 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,020,879
Number of Sequences: 59808
Number of extensions: 336184
Number of successful extensions: 846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)