Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D24
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47710.1 68414.m05302 serpin, putative / serine protease inhi...    42   3e-04
At2g13650.2 68415.m01505 GDP-mannose transporter (GONST1) identi...    32   0.37 
At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identi...    32   0.37 
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    31   0.48 
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    29   2.6  
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    29   3.4  
At2g25240.1 68415.m03020 serpin, putative / serine protease inhi...    28   6.0  

>At1g47710.1 68414.m05302 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 391

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 6/159 (3%)
 Frame = +2

Query: 134 LVTRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILK 313
           ++T V+Q   S+ + S  S   +LS ++ G+A  T D+I + L+       N     I+ 
Sbjct: 21  VITTVSQN--SNVIFSPASINVVLSIIAAGSAGATKDQILSFLKFSSTDQLNSFSSEIVS 78

Query: 314 EI----GKNDGGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVYELPWXXXXXXXXX-I 478
            +      N G  L  +   +ID  ++    FKQ ++++  +   +  +          +
Sbjct: 79  AVLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKAASNQADFQSKAVEVIAEV 138

Query: 479 NDFVRSATHEAFDEIVTPSELDGVL-LVLIDALYFKGHW 592
           N +    T+    E++     D +  L+  +ALYFKG W
Sbjct: 139 NSWAEKETNGLITEVLPEGSADSMTKLIFANALYFKGTW 177


>At2g13650.2 68415.m01505 GDP-mannose transporter (GONST1) identical
           to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
           thaliana]
          Length = 284

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
 Frame = +2

Query: 74  CNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGLSAWAILST--LSFGAAEETFDE 247
           C+    ++F+  S Y+FNAG+   + Q   S  +V GLS   +++T  L+    +  F  
Sbjct: 45  CSMILVNKFVLSS-YNFNAGIFLMLYQNFVSVIIVVGLSLMGLITTEPLTLRLMKVWFPV 103

Query: 248 INTVLRLHPHVCFNRKYFNI-LKEIGKNDGGVLEHSGAMFIDSK 376
               + +     F+ KY N+ +  + KN   V+   G M++ +K
Sbjct: 104 NVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNK 147


>At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identical
           to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
           thaliana]
          Length = 333

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
 Frame = +2

Query: 74  CNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGLSAWAILST--LSFGAAEETFDE 247
           C+    ++F+  S Y+FNAG+   + Q   S  +V GLS   +++T  L+    +  F  
Sbjct: 45  CSMILVNKFVLSS-YNFNAGIFLMLYQNFVSVIIVVGLSLMGLITTEPLTLRLMKVWFPV 103

Query: 248 INTVLRLHPHVCFNRKYFNI-LKEIGKNDGGVLEHSGAMFIDSK 376
               + +     F+ KY N+ +  + KN   V+   G M++ +K
Sbjct: 104 NVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNK 147


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 264 LSTVLISSKVSSAAPNDSVDRIAHADSPDTTKW 166
           +S  LI S +++ +PN     ++H DSP++T W
Sbjct: 554 MSENLIHSPITTLSPNSKRVSLSHLDSPESTPW 586


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1544

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 380 NVYEQFKQDVQNTGVSEVYELPWXXXXXXXXXINDFVRSATHEAFDEIVTPSELDGVLLV 559
           +V+  F++D ++     +YE+            ND V    HE    +V   E    L+V
Sbjct: 17  DVFLSFQRDARHKFTERLYEV--LVKEQVRVWNNDDVERGNHELGASLVEAMEDSVALVV 74

Query: 560 LIDALYFKGHW 592
           ++   Y K HW
Sbjct: 75  VLSPNYAKSHW 85


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
 Frame = +2

Query: 164 SHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDGGV- 340
           S+ V S +S   +L  ++ G+   T ++I + + L      N      +  +  NDG   
Sbjct: 29  SNLVFSPMSINVLLCLIAAGSNCVTKEQILSFIMLPSSDYLNAVLAKTVS-VALNDGMER 87

Query: 341 ----LEHSGAMFIDSKINVYEQFKQDVQNTGVSEVYELPWXXX-XXXXXXINDFVRSATH 505
               L  +  ++ID  ++    FK  ++N+  +   ++ +          +N +    T+
Sbjct: 88  SDLHLSTAYGVWIDKSLSFKPSFKDLLENSYNATCNQVDFATKPAEVINEVNAWAEVHTN 147

Query: 506 EAFDEIVTPSELDGV---LLVLIDALYFKGHW 592
               EI++   +  +   +L+L +A+YFKG W
Sbjct: 148 GLIKEILSDDSIKTIRESMLILANAVYFKGAW 179


>At2g25240.1 68415.m03020 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 324

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +2

Query: 341 LEHSGAMFIDSKINVYEQFKQDVQNTGVSEVYELPWXXX-XXXXXXINDFVRSATHEAFD 517
           L  +  ++ID   ++   FK  ++N+  +   ++ +          +N +    T+    
Sbjct: 27  LSIANGVWIDKFFSLKLSFKDLLENSYKATCSQVDFASKPSEVIDEVNTWAEVHTNGLIK 86

Query: 518 EIVTPSELDGV---LLVLIDALYFKGHW 592
           +I++   +D +    LVL +A+YFKG W
Sbjct: 87  QILSRDSIDTIRSSTLVLANAVYFKGAW 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,467
Number of Sequences: 28952
Number of extensions: 240873
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)