Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D23
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   1.9  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   3.4  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    25   7.8  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 210 TISHKAPPRLHDI--DCQIRKFNELKENDCYMTDRDPAKNSQLY*TTTNSTAFKHP 49
           ++ H  PP   +I  D + +K  ELK    ++ + DP K ++       S+A K P
Sbjct: 157 SLQHALPPEHRNIWFDMEKQKKEELKNKHSWLYNEDPFKAAKELQAARASSAAKPP 212


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 112 RPRQKLPVILNNDQFNSIQTS*DRIIIRH 26
           R R++ PV++ N   N I +  DR+++RH
Sbjct: 103 RGRKEKPVVIVNAAENDIGSFKDRLLLRH 131


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 210 TISHKAPPRLHDIDCQIRKFNELKE 136
           T+SH      ++++  IRK NEL+E
Sbjct: 48  TLSHTQEQEFNELNKLIRKINELQE 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,185
Number of Sequences: 5004
Number of extensions: 37976
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)