Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D23
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0377 - 4970034-4970687                                           29   2.6  
03_01_0301 - 2357324-2358861,2359553-2359661                           28   4.5  
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     27   7.9  

>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 374 CGTAQFCASVMNSQRCQLQQNGGSSCSN 291
           CGT     +  +SQRC   Q GG++CSN
Sbjct: 49  CGTGCQSGACCSSQRCG-SQGGGATCSN 75


>03_01_0301 - 2357324-2358861,2359553-2359661
          Length = 548

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 267 LKNICYALSSIINLQQIK*TISHKAP 190
           LKN   +LSS+ NL+QIK  I H  P
Sbjct: 229 LKNFDSSLSSMPNLEQIKALIEHYGP 254


>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
 Frame = -3

Query: 357  LCQCHEFSAVPTPAKRWXXXXXXXXXLCRHLKNICYALSSIINLQQIK*TISHKAPPRLH 178
            +C CHE + +P   +            C  L+ +   L    +LQ I+        P LH
Sbjct: 954  ICGCHELTCLPQGLQHISSIRSLAIDNCNKLETLPEWLEHQPSLQVIR----LSGCPALH 1009

Query: 177  DIDCQIRKFN--ELKENDC-YMTDRDPAK 100
             I   + + N  E+  NDC  +T++   K
Sbjct: 1010 SISEGLLRGNSIEIHMNDCPNLTEQSSGK 1038


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,555
Number of Sequences: 37544
Number of extensions: 229186
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)