Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D22
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   3.1  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   3.1  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   3.1  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   4.1  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    24   7.1  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         24   9.4  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    24   9.4  

>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 302 LIYISSYINQFFIVNFLFYFVI 367
           L+Y++ Y+N F+    L+YF++
Sbjct: 42  LVYVTRYLNLFWRYKSLYYFLM 63


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 233 KMCQYNLIIKIKLFY*HNNYALKLIYISSYINQF--FIVNFLFYFVI*PIP 379
           K+C    I+ + LFY    Y   ++Y S Y+ Q    +  F    VI P+P
Sbjct: 69  KLCLLCGIVTLLLFYFSGLYRTTIVYPSRYVQQVNKAMRFFNIRLVITPVP 119


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 194 VTILNNEYITTPLKMCQYNL-IIKIKLFY*HNN--YALKLIYISSYINQFFIVNFLFYF 361
           V  +NN  I+ P     +   I  +  FY   N  + +K+ Y+S +   FF+ +F F F
Sbjct: 27  VAFVNNTTISKPYFSTFFEGGIHSLLFFYPKRNWWFFIKMRYLSFFFEFFFLFSFAFAF 85


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 167 INICKYIKSVTILNNEYITTPLKMCQYNLIIKIKLF 274
           I+  KY+    I + E ITTP  +C  +   ++ L+
Sbjct: 233 IHTAKYLLGHIIDDEEIITTPASVCSEDYAQEVNLY 268


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 90  FRNKTCT*KFHLFKIFIQSNGFM*LCK 10
           F  KT   K HL  I I S+GF  L K
Sbjct: 715 FSRKTSKLKLHLSNINISSSGFKILAK 741


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 209 NEYITTPLKMCQYNLIIKIK-LFY*HNNYALKLIYI 313
           NE+ + P+K C Y  I++ + L    N+  + L Y+
Sbjct: 100 NEHFSFPVKCCAYQFILRNRFLLIWCNSETIHLTYL 135


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 167 INICKYIKSVTILNNEYITTPLKMCQY 247
           I +CKY K    L+N      + MC+Y
Sbjct: 270 IEVCKYFKDDITLDNLSRAQLVAMCRY 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,941
Number of Sequences: 5004
Number of extensions: 23720
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)