Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D22
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_26079| Best HMM Match : DUF1534 (HMM E-Value=2.5)                   27   5.2  
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                27   6.9  
SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)                 26   9.2  

>SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 256 Y*IILTHF*RCSYIFII*YCNRF-YILANVYLKLYTYFNFLLMFLTIVK*YLHLVY 92
           Y + + ++ R  Y+  + YC R  Y+L  +Y    TY    +M+ T +   LH++Y
Sbjct: 68  YFLHVMYYARIPYLLHVMYCTRITYLLHVMYYTRITYL-LHVMYYTRIPYLLHVMY 122



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 238 HF*RCSYIFII*YCNRF-YILANVYLKLYTYFNFLLMFLTIVK*YLHLVY 92
           ++ R  Y+  + YC R  Y+L  +Y     YF   +M+ T +   LH++Y
Sbjct: 2   YYTRIPYLLHVMYCTRITYLLHVMYCTRIPYF-LHVMYYTRIPYLLHVMY 50


>SB_26079| Best HMM Match : DUF1534 (HMM E-Value=2.5)
          Length = 165

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 185 IKSVTILNNEYITTPLKMCQYNLIIKIKL 271
           I  VT++    IT PL +CQ  L+ K++L
Sbjct: 67  IIGVTVVLRTCITLPLAICQNKLVAKLEL 95


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 54  INEIFRCMSYF*IYTRCKYYFTIVKNINKKLKYVY 158
           I +IF  +SY  I+ R K+ F  +K I  ++K ++
Sbjct: 736 IKQIFDRISYSKIFDRIKHSFDRIKQIFDRIKQIF 770


>SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)
          Length = 407

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = +2

Query: 167 INICKYIKSVTILNNEYITTPLKMCQYNLIIKIKLFY*HN-------NYALKLIYISSYI 325
           +NI KY KSV  +   Y+   L    Y L + +++            N    +IYISS I
Sbjct: 277 LNISKYWKSVITMGYVYLFLVLCYLPYMLTLGVRVLIGLTKEYKLVLNITTSVIYISSSI 336

Query: 326 NQF 334
           N F
Sbjct: 337 NPF 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,481,331
Number of Sequences: 59808
Number of extensions: 146177
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)