Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D22
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF068720-2|AAC17787.1|  346|Caenorhabditis elegans Seven tm rece...    27   6.0  
Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.4 protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 140 FINVFDYCEIIFAPC---IYLEIRHAPKNFIYLKY 45
           F+N+F YC  IF  C   +  E +   KN +Y K+
Sbjct: 150 FLNIFCYCTTIFCTCALGLLDEDQLTAKNRVYEKF 184


>Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical
           protein R11A8.3 protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 290 YALKLIYISSYINQFFIVNFLFY 358
           +  K++ + + IN+F+ +N LFY
Sbjct: 4   FLFKILLVCTIINEFYTLNILFY 26


>AF068720-2|AAC17787.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 240 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 95  IYLEIRHAPKNFIYLKYLYKVMGLCNYVNQI 3
           IYL +RH+PK+  + KYL   + L   +  I
Sbjct: 27  IYLILRHSPKSLGFYKYLMIYIALFEMIYAI 57


>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 107 FAPCIYLEIRHAPKNFIYLKYLYKVMGLCNYV 12
           F P  Y   RH   N+I+L ++  V+ L  YV
Sbjct: 115 FFPIFYYNHRHKLSNYIFLIFISSVVILDQYV 146


>AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical
           protein Y46G5A.8 protein.
          Length = 193

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 190 FYILANVYLKLYTYFNFLL-MFLTIVK*YLHLVYI*K 83
           FYI ++++L ++  F+FL  +FL ++     +VY+ K
Sbjct: 156 FYIFSSLFLSIFVRFSFLYPIFLILLIVIFSIVYLWK 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,894,510
Number of Sequences: 27780
Number of extensions: 131424
Number of successful extensions: 259
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)