Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_D21
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22540.1 68418.m02630 expressed protein contains Pfam profile... 37 0.009
At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote... 32 0.34
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00... 31 0.45
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00... 31 0.59
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p... 31 0.78
At3g62160.1 68416.m06984 transferase family protein low similari... 29 2.4
At5g49850.1 68418.m06173 jacalin lectin family protein similar t... 28 5.5
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put... 27 7.3
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR... 27 7.3
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 27 9.6
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont... 27 9.6
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa... 27 9.6
>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 440
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 485 EAIRFLDIFEKTFVQSPTERQFESYGKKLDFHDEQAINFV 604
EA LD+ KTFV P++R+ + + K F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256
>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor-like
protein kinase
Length = 680
Score = 31.9 bits (69), Expect = 0.34
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +2
Query: 128 YANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY---GNLKHRR--GE 292
Y + SN FL+ + +L+ + + F + +F+ LP W+ S Y + K + GE
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGE 204
Query: 293 IYYNFYQQLTTRYYFERLTNGLGSIPE 373
++ + T Y R + GS+P+
Sbjct: 205 LHSSLLSLSTIEYIDLRANSLSGSLPD 231
>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 571
Score = 31.5 bits (68), Expect = 0.45
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 72 TMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 167
T+QR+ + E+ K+ C++P +PT +FT K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553
>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 568
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 33 LRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 167
L F+ + K V T+QRL + E+ K+ C+ P P+ +FT M+
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550
>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
protein similar to SP|P28493 Pathogenesis-related
protein 5 precursor (PR-5) {Arabidopsis thaliana};
contains Pfam profile PF00314: Thaumatin family
Length = 255
Score = 30.7 bits (66), Expect = 0.78
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 412 GIVTSLNRRVPREFRYGTQAVCKT 341
G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188
>At3g62160.1 68416.m06984 transferase family protein low similarity
to Taxus cuspidata transferases: 10-deacetylbaccatin
III-10-O-acetyl transferase GI:6746554, taxadienol
acetyl transferase GI:6978038,
2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
transferase GI:11559716; contains Pfam profile PF02458
transferase family
Length = 428
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 409 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 320
I + L R REFR T +C EVI C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253
>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 596
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/59 (20%), Positives = 25/59 (42%)
Frame = +2
Query: 275 KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 451
K +G F ++ + F + G + WY+P+ GY + ++++P P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444
>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase,
putative contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 953
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -1
Query: 603 TKLMACSSWKSSFLPYDSNCLSVGDCTKVFS-KMSKNRIA 487
TKL+ S++ S F+P D +G+CT ++ +++ NR+A
Sbjct: 436 TKLLLLSNYLSGFIPPD-----IGNCTNLYRLRLNGNRLA 470
>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1219
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -3
Query: 604 DKVNGLFIVEIKFLAIRFELPFCRGLYESLFKNVQEPYC 488
DK+ G+F+ K A+R +G+Y + + + +C
Sbjct: 539 DKIRGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHC 577
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 350 NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFE 514
+GL +IP +W + +TG + + P D V NYE L+ F+
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFD 1058
>At4g36180.1 68417.m05148 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 1136
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 415 DDFILFPIRSKAGQLQSTQRKELRSNTVLGHF*KDFRTVPYRKAI 549
D+ I I + G + + ELRSN ++GH D +P K +
Sbjct: 581 DNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVL 625
>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -2
Query: 185 GRSTSVLHYCKGKCWNSWRNTHTALPLLQF 96
G+ LH C SW N H P+ +F
Sbjct: 151 GKELKCLHLYHSSCIVSWLNIHNTCPICRF 180
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,963,615
Number of Sequences: 28952
Number of extensions: 262313
Number of successful extensions: 777
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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