Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D16
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    42   4e-05
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    28   1.00 
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    27   1.7  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    26   3.0  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   4.0  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   5.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   7.0  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +1

Query: 37  SNMVVVTLNYRLGPLGFLSTAD--EIIP--GNNGLKDQSFALHWVKNNINMFGGNPDSIT 204
           +  ++V+  +RL   GFL+  +  E  P   N G  DQ   L W   +I  FGGN ++I 
Sbjct: 133 AKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIA 192

Query: 205 LTGCSAGGASVHYHYL 252
           + G SAG  S  +  +
Sbjct: 193 VGGISAGSYSALFQLI 208


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 46  VVVTLNYRLGPLGFLSTADEIIPGNNGLKDQSFALHWVKNNINMFGGNPD-SITLTGCSA 222
           V V+++YRL P      A           D   +  WV +NI   G NP     L G SA
Sbjct: 123 VCVSVDYRLAPESKFPVAHN---------DAIDSFKWVASNIEKLGANPKRGFFLGGASA 173

Query: 223 GG 228
           GG
Sbjct: 174 GG 175


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 46  VVVTLNYRLGPLGFLSTADEIIPGNNGLKDQSFALHWVKNNINMFGGNPDSITLTGCSAG 225
           VVV ++YRL P       ++  P    + D   AL +   N +  G NP+ I + G SAG
Sbjct: 133 VVVNVDYRLAP-------EDPFPAC--IDDGWEALLYCYENADTLGINPNKIAVGGSSAG 183

Query: 226 G 228
           G
Sbjct: 184 G 184


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +2

Query: 233 VYIIIIYHHYLEVRSTEGL 289
           V II++YH+Y+  ++T+G+
Sbjct: 47  VRIIVLYHYYISSKTTDGM 65


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 75  PQSVVQRDDDHIRIHKVRRIIDATF 1
           PQ ++   +D+ R HKVR  ID +F
Sbjct: 208 PQKIMWMAEDYWRRHKVRSNIDVSF 232


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 118  NNGLKDQSFALHWVKNNIN 174
            ++GL D S +LHWV   IN
Sbjct: 1171 SDGLPDSSSSLHWVNKLIN 1189


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 268  GTFNRGIAFSGSAFTSWSHSVKPAQKAKTLASIVGCSNNNS 390
            G   R +  S S     SHS+    K  T ASI+   NN+S
Sbjct: 1354 GDLLRLVHLSNSFRMVGSHSLMEGDKVTTSASIIAILNNDS 1394


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 87  ESQRPQSVVQRDDDHIRIHKV 25
           ES RP+++   DDD+I+I++V
Sbjct: 198 ESVRPEALGISDDDYIQIYEV 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,290
Number of Sequences: 5004
Number of extensions: 48760
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)