Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_D16
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 33 0.11
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 33 0.19
10_08_0689 + 19912040-19912186,19912483-19912548 29 3.1
11_02_0047 + 7716315-7716420,7716518-7716647,7716785-7716856,771... 28 4.1
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 27 7.1
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 27 7.1
06_03_0053 + 16034391-16034439,16034598-16034737 27 9.4
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701... 27 9.4
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +1
Query: 28 LMDSNMVVVTLNYRLGPLGFLSTADEIIPGNNGLKDQSFALHWVKNNINMFGGNPDSITL 207
L + ++V ++YR P G T +++ D S + +V NNI +GG+P+ I L
Sbjct: 170 LAERGIIVACIDYRNFPQG---TIGDMV------SDASQGISYVCNNIASYGGDPNRIYL 220
Query: 208 TGCSAG 225
G SAG
Sbjct: 221 VGQSAG 226
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = +1
Query: 28 LMDSNMVVVTLNYRLGPLGFLSTADEIIPGNNGLKDQSFALHWVKNNINMFGGNPDSITL 207
L + ++V ++YR P G T +++ +D S + +V NNI +GG+P+ I L
Sbjct: 178 LAERGILVACIDYRNFPQG---TIGDMV------EDASQGIAFVCNNIASYGGDPERIYL 228
Query: 208 TGCSAG 225
G SAG
Sbjct: 229 VGQSAG 234
>10_08_0689 + 19912040-19912186,19912483-19912548
Length = 70
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 170 MLFLTQW---RAND*SFKPLLPGIISSAVLRNP 81
M LT W RAN S +PL PGI S +L P
Sbjct: 14 MTLLTAWVSYRANLASSRPLTPGIFSDRLLERP 46
>11_02_0047 +
7716315-7716420,7716518-7716647,7716785-7716856,
7717007-7717078,7717274-7717345,7717684-7717845,
7718105-7718176,7718435-7718503,7718788-7718859,
7718992-7719129,7719386-7719888,7720007-7720171,
7720267-7720403,7720488-7720707,7720793-7721028,
7721165-7721632
Length = 897
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 118 NNGLKDQSFALHWVKNNINMFGGNPDSITL 207
N GL + + ALH + +N N GG P ++TL
Sbjct: 193 NTGLDNLTNALHLLLDNNNFTGGIPPTLTL 222
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +1
Query: 40 NMVVVTLNYRLGPLGFLSTADEIIPGNNGLKDQSFALHWVKNNINMFGGNPDSITLTGCS 219
N++VV NYR G LGF A + +PGN G +D + L + I + + + G S
Sbjct: 563 NLLVV--NYR-GSLGFGEEALQSLPGNIGSQDVNDVLTALDFVIKKGLIDASKVAVVGGS 619
Query: 220 AGG 228
GG
Sbjct: 620 HGG 622
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 127 LKDQSFALHWVKNNINMFGGNPDSITLTGCSAG 225
+ D S + +V + +GG+P+ I L G SAG
Sbjct: 237 VSDASDGISFVCETVGAYGGDPNQIYLMGQSAG 269
>06_03_0053 + 16034391-16034439,16034598-16034737
Length = 62
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 263 LEVRSTEGLLSVDPPSHHGVTPSNRRRRRKH 355
+++RS E + DP HG N+ RKH
Sbjct: 23 VDLRSQEEPVVADPNGRHGTQIQNKNSHRKH 53
>01_06_1714 -
39368509-39369153,39369607-39369850,39369995-39370191,
39370607-39370708,39370826-39371026,39371138-39371381,
39371813-39371983,39372450-39372751
Length = 701
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 273 VQQRDCFQWIRLHIMESLRQTGAEGENTRLYS 368
V+ D F W + ++ SLR+ G G TRL S
Sbjct: 38 VECGDYFDWQAVGLLHSLRKAGQPGGVTRLLS 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,403
Number of Sequences: 37544
Number of extensions: 348161
Number of successful extensions: 849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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