Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_D15
(457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55210.1 68418.m06882 expressed protein similar to unknown pr... 30 0.85
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 30 0.85
At2g05645.1 68415.m00604 hypothetical protein 30 0.85
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote... 29 1.1
At3g02740.1 68416.m00266 aspartyl protease family protein contai... 29 1.1
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 29 1.1
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si... 28 2.6
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim... 28 2.6
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 28 3.4
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 3.4
At5g22850.1 68418.m02671 aspartyl protease family protein contai... 27 4.5
At3g28850.1 68416.m03599 glutaredoxin family protein 27 4.5
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 4.5
At3g01200.1 68416.m00026 expressed protein contains Pfam domain ... 27 6.0
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 7.9
At3g53530.1 68416.m05911 heavy-metal-associated domain-containin... 27 7.9
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 27 7.9
>At5g55210.1 68418.m06882 expressed protein similar to unknown
protein (pir||T04913)
Length = 168
Score = 29.9 bits (64), Expect = 0.85
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 91 INSTLVRTTSSAARSRCTAL-SNRDRGLKTYWKKVSTQLEQVSRASRVGG 237
+ S L RT+S + TA+ S R R K W +VST V RAS+ G
Sbjct: 4 VGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNG 53
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 29.9 bits (64), Expect = 0.85
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 394 RQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 290
RQ+ + +VD + G + P L G+ T + G PP
Sbjct: 76 RQSSVGGVVDFPVQGSSDPYLVGLYFTKVKLGSPP 110
>At2g05645.1 68415.m00604 hypothetical protein
Length = 204
Score = 29.9 bits (64), Expect = 0.85
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 235 HQLSMLLKPVPVVSKPFSNMFLVHG 161
H+ +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154
>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
kinase, putative protein kinase TMKL1, Arabidopsis
thaliana, PID:E353150
Length = 757
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -1
Query: 370 VDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSK 191
VD+S + T P+ + +++ N + GN+ LCGKP ++L S L P P +S+
Sbjct: 249 VDLSFNNLTGPIPSSLSLLN----QKAESFSGNQELCGKPLKILCSIPSTLSNP-PNISE 303
Query: 190 PFS 182
S
Sbjct: 304 TTS 306
>At3g02740.1 68416.m00266 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 488
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 421 GIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 287
G + H +HR + L +DI + G + P G+ I G P R
Sbjct: 52 GALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSR 96
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 412 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 287
++H Q+ + +V+ +DG + P L G+ T + G PPR
Sbjct: 54 ARHGRLLQSPVGGVVNFPVDGASDPFLVGLYYTKVKLGTPPR 95
>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
similarity to unusual floral organs (UFO) GI:4376159
from [Arabidopsis thaliana]
Length = 403
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 4 LLVPNTIAWAAS*ASMTNALTCSKSIASSINSTLVRTTSSAARS 135
L PN I+W + +LTC+ S+ SS N L + S ++ S
Sbjct: 112 LFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVS 155
>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 190
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 214 KPVPVVSKPFSNMFLVHGLCSIT 146
K PV +K F NM +H LCS T
Sbjct: 99 KIFPVNNKYFENMIFIHALCSST 121
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 338 RYGFTIN*YVYYEGEIRLSVECMF 409
R G IN +VYYE +IR V+ +F
Sbjct: 227 RVGTCINGHVYYEAQIRFKVDDIF 250
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -3
Query: 320 DDEHLERQTAEGSER*QKPVRKAKATLIPP-TLDALETCS---SCVETFFQYVFSPRSLF 153
DD +++ + + S ++PV K A+ P T D+L + + ++ F F P SLF
Sbjct: 109 DDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLF 168
Query: 152 DNAVHLERAADDVVLTS 102
+ E AA D + ++
Sbjct: 169 --SAGFEPAAKDSLFSA 183
>At5g22850.1 68418.m02671 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 493
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 382 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 287
L ++D +DG P + G+ T + G PPR
Sbjct: 61 LGGVIDFPVDGTFDPFVVGLYYTKLRLGTPPR 92
>At3g28850.1 68416.m03599 glutaredoxin family protein
Length = 428
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 419 HCVETYTPPTSVSRLHSRH 363
HC Y+PP V R HS H
Sbjct: 14 HCRRGYSPPVDVQRSHSVH 32
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -1
Query: 301 GKPPRVPRGNRSLCGKP--RRLLYH 233
GKPP GN SLCGK + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210
>At3g01200.1 68416.m00026 expressed protein contains Pfam domain
PF03618: Domain of unknown function (DUF299)
Length = 377
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 30 GRLMSINDKRLDMLEIDSFVYKLDTG--KNNIVRSSLEMHGVIE--QRPWTKNILEKGFD 197
GR+ ++ND +E F K D G N+ ++ + + GV + P + I +KG+
Sbjct: 202 GRVKTLNDAYFKRIEAIEFTIKQDDGTLPENLSKADIVLVGVSRTGKTPLSTYIAQKGYK 261
Query: 198 TTGTGF 215
F
Sbjct: 262 VANVPF 267
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +1
Query: 97 STLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQLEQVSRASR 228
S ++++ + R + +SNR +GL + W K+ +++ + + +R
Sbjct: 278 SAILQSVNGLRFYRISDISNRAKGLLSRWTKLFAKIQAMKKQNR 321
>At3g53530.1 68416.m05911 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403
Length = 247
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Frame = -1
Query: 424 RGIVSKHTLHRQAYLAFIVD-----ISIDGKTIPV-----LTGVTMTNIWRGKPPRVPRG 275
+G V KH Q +F +D +++ G P+ L+ V W PP +PR
Sbjct: 184 QGKVKKHLSKMQGVTSFNIDFASKKVTVTGDITPLEVLGCLSKVKNAQFWTPPPPSIPRA 243
Query: 274 N 272
N
Sbjct: 244 N 244
>At2g48050.1 68415.m06014 expressed protein ; expression supported by
MPSS
Length = 1500
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 179 IGKRFRHNWNRFQEHRELV 235
IG+ FRH W+R Q + ++V
Sbjct: 980 IGRIFRHIWSRMQSNNDIV 998
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,097,321
Number of Sequences: 28952
Number of extensions: 201693
Number of successful extensions: 615
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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