Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D14
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    29   0.69 
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   4.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.8  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   6.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.4  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.4  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 452 CYHRTLSPILPLMPXSRSSWDLSTTXMDSPSHWKKTGINSTNWIG 586
           C H  L+P  P          LS   +   S+W++T ++ TNW+G
Sbjct: 193 CLHEELAPFRPFPKF------LSVKAIIFASYWQQTVLSITNWLG 231


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 2   EALSETIGQRSADLYEEEVTKDYQRSYEIVAR 97
           EAL+   G+     Y EE    Y++ +EI+A+
Sbjct: 288 EALAIAFGEAEKHNYYEEYKSSYKKRFEILAK 319


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 39   ICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLN 161
            IC     Q  I     L  + C    L HS+S P C  +LN
Sbjct: 1094 ICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLN 1134


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 186 GLEVRFGQSSSALGMKVCLSNGLGAA 109
           G ++ FGQSS   G +V   N L +A
Sbjct: 119 GQDINFGQSSVNQGWQVAFKNALASA 144


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 502 IFLGPKYNDXGFPITLEENWHKFYELDWF 588
           I L P  ND  +  T    WHKF++  WF
Sbjct: 418 IELAPAANDIQWHNTYIGRWHKFFQ-GWF 445


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 238 KHYLKPLSSKRNFISSVFKSNDVVVEKLVT 327
           +HYL+ LS+ R     V+ +    VEK+VT
Sbjct: 250 EHYLQKLSAARAQFMEVYDTVKAEVEKMVT 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,337
Number of Sequences: 5004
Number of extensions: 50122
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)