Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D14
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0976 - 9821481-9821973,9822417-9822940                           30   1.2  
06_01_1143 - 9554338-9554983,9555004-9555746                           28   6.6  
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690...    28   6.6  
04_04_1478 - 33882625-33883639,33883725-33883849,33883935-338841...    27   8.7  
02_05_0314 + 27818077-27818809,27818839-27818906,27819345-278195...    27   8.7  

>12_01_0976 - 9821481-9821973,9822417-9822940
          Length = 338

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 201 LYDRIVGYINACQALPEAVI 260
           ++D I+GY NAC+A PE V+
Sbjct: 214 IWDHIIGYWNACKANPEKVL 233


>06_01_1143 - 9554338-9554983,9555004-9555746
          Length = 462

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 413 KVRQTTTQPQAFQCYHRTLSPILPLMPXSRSSWDLSTTXMDSPSHWKKTG 562
           K+R +  QP+ F  +H   + +  +    R +W+LS   +++ S    +G
Sbjct: 77  KIRLSNQQPEDFPAWHLEKTGLFIVKSAYRLAWNLSKNVVEASSSTATSG 126


>06_01_0897 -
           6903294-6903401,6903781-6903855,6904239-6904379,
           6904496-6904646,6905035-6905178,6905276-6905366,
           6906071-6906308
          Length = 315

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 223 TLTHVKHYLKPLSSKRNFISSVFKSNDVV 309
           +L+HVK Y+K + S  +F+ ++    DV+
Sbjct: 246 SLSHVKKYMKTIFSMDSFVKTIALQEDVI 274


>04_04_1478 -
           33882625-33883639,33883725-33883849,33883935-33884144,
           33884645-33884650
          Length = 451

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 467 LSPILPLMPXSRSSWDLSTTXMDSPSHWKKTGINST 574
           L P++PL     S   L    +D PSH+  TG+++T
Sbjct: 133 LVPLIPLEDDDASD-QLEGPTLDLPSHYNITGVSNT 167


>02_05_0314 +
           27818077-27818809,27818839-27818906,27819345-27819528,
           27819700-27819800,27820479-27820586,27820728-27820946
          Length = 470

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 124 IRQAHLHAQCA*TLTKPDFETLHSISYMTGLWVTLTHVKHYLKPLSS-KRNFISSVFKSN 300
           +R+ H +      +T     T   +SY T LW  L     Y+ P+S  K  FI      +
Sbjct: 205 LRKLHKYTSENPLITLEGESTKKYMSYQTSLWSALEDPAKYVGPISHFKEKFIR--LMHS 262

Query: 301 DVVVEKLVTFF 333
            V+V+K  T F
Sbjct: 263 IVIVQKWKTNF 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,454
Number of Sequences: 37544
Number of extensions: 307274
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)