Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D14
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS...    28   4.1  
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS...    28   4.1  
At2g24960.1 68415.m02985 expressed protein ; expression supporte...    28   4.1  
At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma mem...    28   5.4  
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i...    27   7.2  
At1g50730.1 68414.m05705 expressed protein                             27   7.2  
At1g33250.1 68414.m04110 fringe-related protein + weak similarit...    27   7.2  
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ...    27   9.5  
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    27   9.5  

>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 438

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 508 LGPKYNDXGFPITLEENWHKFY 573
           + P+YND  FP    + WHK +
Sbjct: 337 MNPRYNDFKFPQIKAQPWHKIF 358


>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 431

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 508 LGPKYNDXGFPITLEENWHKFY 573
           + P+YND  FP    + WHK +
Sbjct: 330 MNPRYNDFKFPQIKAQPWHKIF 351


>At2g24960.1 68415.m02985 expressed protein ; expression supported
           by MPSS
          Length = 797

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 87  LSLAMCSVQHLNHSTSTPSCPVRLNFDQTGLRDPAFYQLYDRIVGYINACQALPE 251
           L + +C  Q     T  P C    + D      P   ++Y RI   ++A QALP+
Sbjct: 700 LGIVVCKAQKTGVETRKPLCETEGDDDDCTKPMPQI-EIYSRIGNALDALQALPD 753


>At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA9)
           identical to SP|Q9LU41 Potential calcium-transporting
           ATPase 9, plasma membrane-type (EC 3.6.3.8)
           (Ca(2+)-ATPase isoform 9) {Arabidopsis thaliana}
          Length = 1086

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 115 CCTEHMASDNFIRSLIILCNFFFIQIGASLTNSFR 11
           CCT++M S+  ++S+     FF + I +   NS R
Sbjct: 624 CCTQYMDSNGTLQSIESQKEFFRVAIDSMAKNSLR 658


>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
           identical to actin-related protein 6 (ARP6) [Arabidopsis
           thaliana] GI:21427467; contains Pfam profile PF00022:
           Actin
          Length = 421

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +1

Query: 226 LTHVKHYLKPLSSKRNFISSVFKSNDVVVEKL----VTFFDYRQFDATNSVFLI 375
           +TH K Y+K   + + F+S   K + VV++K+        +  + D TN  FL+
Sbjct: 249 VTHTKGYVKDPQAAKRFLSLSEKESVVVMDKVGERKKADMNKNEIDLTNERFLV 302


>At1g50730.1 68414.m05705 expressed protein
          Length = 1013

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 51  KKLQRIINDLMKLS-LAMCSVQHLNHSTSTPSCPVRLNFDQTGLRDPA 191
           K L+RI+     +S L +C  Q    S S  S P     +QT L +PA
Sbjct: 86  KSLKRILMQRFPVSKLLLCFTQSAVESPSALSHPEETGSEQTSLEEPA 133


>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 548

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 400 VTSLNLIFGSRIHC*WHQIADSQRM*LTSQRQHHSI*TP 284
           V  L+L+F       WH + D +   L ++R HH I TP
Sbjct: 58  VAWLSLVFSPTTSRCWHLLKDWEDNHLWNKRYHHPIVTP 96


>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 816

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 123 HSTSTPSCPVRLNFDQTGLRDPA--FYQLYDRIVGYINACQALPEAV 257
           H  S   C +  +FDQTGL D A  F +L D  + + +   ALP ++
Sbjct: 631 HKMSLILCKINKSFDQTGL-DVADIFPKLGDLTIDHCDDLVALPSSI 676


>At3g53090.1 68416.m05851 HECT-domain-containing protein /
           ubiquitin-transferase family protein / IQ
           calmodulin-binding motif-containing protein contains
           Pfam profiles PF00632: HECT-domain
           (ubiquitin-transferase), PF00612: IQ calmodulin-binding
           motif
          Length = 1142

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 131 KHTFMPSALEL*PNRTSRPCILSA 202
           +H F  SAL L P RTSRP I  A
Sbjct: 688 RHPFCASALWLSPGRTSRPPIAFA 711


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,949
Number of Sequences: 28952
Number of extensions: 257297
Number of successful extensions: 684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)