Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_D11
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 66 2e-12
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 32 0.048
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 29 0.34
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 28 0.79
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 1.4
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 5.6
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 5.6
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 5.6
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.3
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 9.7
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 66.5 bits (155), Expect = 2e-12
Identities = 38/132 (28%), Positives = 68/132 (51%)
Frame = +3
Query: 147 GYHVLRVQDGSPGQKANLEPFFDFIVAIENTRLDQDNDTLKELLKANVDKPIKMLIYSSK 326
G+ VL+V++ S A +E ++DFI A+ L+ D LL+ + + + + ++S K
Sbjct: 28 GFRVLKVENDSKAYNARIESYYDFITAVNGILLNGDPSMFMALLRDSSPE-VTLEVFSLK 86
Query: 327 TQSVREVMITPSANWGGQGLLGVSIKFCSFEGANENVWHVLEVHPSSPAEIAGLRPFSDY 506
Q R+V I +++ +G+ +++ S A + +WH+L V SP A L P+ DY
Sbjct: 87 GQITRKVNIKINSD----EKIGMVLQWASIAPAVDAIWHILNVIDDSPVARASLVPYEDY 142
Query: 507 XIGADSIMHESE 542
+G M E
Sbjct: 143 IVGTPEGMMTGE 154
Score = 65.3 bits (152), Expect = 6e-12
Identities = 38/122 (31%), Positives = 64/122 (52%)
Frame = +3
Query: 150 YHVLRVQDGSPGQKANLEPFFDFIVAIENTRLDQDNDTLKELLKANVDKPIKMLIYSSKT 329
+H+L V D SP +A+L P+ D+IV + + L +L+++++++P+++ IY+
Sbjct: 120 WHILNVIDDSPVARASLVPYEDYIVGTPEGMMTGEK-ALSDLIESHLNRPLRLYIYNHYR 178
Query: 330 QSVREVMITPSANWGGQGLLGVSIKFCSFEGANENVWHVLEVHPSSPAEIAGLRPFSDYX 509
S R+V I P+ +WGG G +G C G V H L S P G FS+
Sbjct: 179 DSTRQVTIVPNRHWGGNGAIG-----C---GVGHGVLHRLPAPLSGPPPQPGDIVFSNPM 230
Query: 510 IG 515
+G
Sbjct: 231 LG 232
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 32.3 bits (70), Expect = 0.048
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 277 NNSFNVSLSWSSLVFS--IATIKSKNGSRFAF*PGEPS*TRNT*YPSHPPP 131
N S +SL W+S I K +NG F +P TR + +P HPPP
Sbjct: 442 NRSLPLSLIWNSKAREEYIKKQKEENGDNIEFSHFDPLYTRPSSHPLHPPP 492
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 29.5 bits (63), Expect = 0.34
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 76 IEFLYYKYQWVHPRAPKYPEEGAKDIMYCGFKTVHQVRRRILS 204
+E LY KY + P + K + +CGF+ + +R + S
Sbjct: 74 LEALYEKYSYSSPLPSSVEFKSGKQVEFCGFEKIQSKQRDLKS 116
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 28.3 bits (60), Expect = 0.79
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 397 LTPSNPCPPQLALGVIITSLTDCVLLLYISIFIGLSTLAFNNSF 266
+ PS+ PP+L + + LT + ++IG+S L F+ SF
Sbjct: 38 IPPSSSPPPRLTITQRVKELTKKYGWWSLGVYIGISVLDFSASF 81
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = -3
Query: 451 SNTCHTFSFAPSKEQNFILTPSNP-----CPPQLALGVIITSLTDCVLLLYISI 305
SNT +F P I+ P NP CP V + SL + L LY+ +
Sbjct: 383 SNTVKDLAFLPQSLTTLIVKPCNPASTILCPYLFPTNVRMESLINLELFLYLRL 436
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 158 YMISFAPSSGYFGALG*TH*Y 96
Y I+ +PS+ Y+ A+G TH Y
Sbjct: 199 YTITMSPSNPYYFAIGGTHPY 219
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -3
Query: 448 NTCHTFSFAPSKEQNFILTPSNPCPPQLALGVIITSLTDCVLLLYISIFIGLSTLAFNNS 269
N +T + P+ ++T S P Q GVI+ +T L + LST FN
Sbjct: 1240 NINNTVNMVPADHVARVVTASAFHPEQ---GVIVAHVTSHPRLRFNQFLGTLSTFGFNTK 1296
Query: 268 FNVSLSW 248
+ ++W
Sbjct: 1297 LSEYVNW 1303
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 171 DGSPGQKANLEPFFDFIVAIENTRLDQDNDTLKEL 275
+ +PGQ+ EP FDF + +E R K L
Sbjct: 100 ENNPGQQEINEPIFDFHMFLEQLRSSSAEPVAKYL 134
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 192 PSDLVNRLEPAIHDILRTLLRVFRCSGMN 106
P +L + + IH +L +L VF CS +N
Sbjct: 182 PLELQHSIRTTIHILLDFILDVFSCSPVN 210
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 225 AIENTRLDQDNDTLKELLKANVDKPIKMLIYSSKTQSVREVMITPSAN 368
A+ N D D +KE ++ ++K I +L+ T+ E I+ N
Sbjct: 463 AVVNFVEKDDRDAIKECVETQLNKQINLLVKKRVTEENLEQEISSIIN 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,733
Number of Sequences: 5004
Number of extensions: 48217
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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