Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D11
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791...    35   0.049
03_06_0027 + 31131621-31131676,31131681-31132350,31133152-311333...    30   1.1  
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474...    29   2.4  
12_02_0225 + 15879314-15879430,15880443-15880646                       28   5.6  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    27   7.5  
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907     27   9.9  

>03_05_0968 +
           29277122-29277445,29278389-29278505,29278957-29279114,
           29279678-29279727,29279968-29280161,29280867-29281049,
           29281152-29281270,29281383-29281522,29281857-29281937,
           29282286-29282389
          Length = 489

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = +3

Query: 108 SSQSTEIPGGGCEGYHVLRVQDGSPGQKANLEPFFDFIVAIE---NTRLDQDNDTLKELL 278
           + + T   GGG +G       +G P + A+LE  F+  +A+E   +  LD+  DTL+EL 
Sbjct: 75  AKEVTRRGGGGGDGV----AGEGEPEEAASLERRFEEAIAVEGCMHGELDKVYDTLRELE 130

Query: 279 KANVDKPIKMLIYSSKTQSVR 341
           KA   K I +L+     Q+VR
Sbjct: 131 KAEGVK-IDLLLCCGDFQAVR 150


>03_06_0027 +
           31131621-31131676,31131681-31132350,31133152-31133319,
           31134771-31134986,31135593-31135909,31136058-31136169,
           31136256-31136492,31136582-31137172
          Length = 788

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 352 IITSLTDCVLLLYISIFIGLSTLA-FNNSFNVSLSWSSLVFSIATIKS 212
           +I+S +  V +LY  IF GL TL+ F N    + +W  ++FSI  + S
Sbjct: 454 VISSNSLAVKILY-PIFWGLMTLSTFGNDLEPTSNWLEVIFSIINVLS 500


>06_03_0940 +
           26145746-26145879,26146740-26146821,26147349-26147427,
           26147527-26147624,26148392-26148479,26148589-26148686,
           26148881-26148982,26149237-26149281,26150535-26150574,
           26150988-26151074,26151254-26151330,26151746-26151808,
           26152650-26152766,26152905-26153116,26153690-26153785,
           26153869-26153935,26154028-26154081
          Length = 512

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +3

Query: 171 DGSPGQKANLEPFFDFIVAIENTRLDQDND-TLKELLKANVDKPI-KMLIYSSKTQS 335
           D SPGQ + +    D +VA+  T+ D      LKELL+ +V++ + K L+ S KT++
Sbjct: 160 DVSPGQPSLISDDTD-VVALVGTKKDLAKQINLKELLEDSVEERMEKTLLESDKTEA 215


>12_02_0225 + 15879314-15879430,15880443-15880646
          Length = 106

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 340 LTDCVLLLYISIFIGLSTLAFNN---SFNVSLSWSSLVFSIATIKSKNGSR 197
           LT  ++   +   +GL  +  +N   +F  SL WS LV       S+ GSR
Sbjct: 13  LTGAIVFKGVDSELGLIKIVLHNGHETFYFSLEWSKLVAEFPIASSRKGSR 63


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 138 GCEGYHVLRVQDGSPGQKANLEPFFDFIV 224
           GC+  H L V D  PG  +N EP  D I+
Sbjct: 79  GCDFEHWLVVMDPPPGDPSNPEPTRDEII 107


>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
          Length = 794

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 249 QDNDTLKELLKANVDKPIKMLIYSSKTQSVREVMITPSAN---WGGQGLLGVSIKFCSFE 419
           QDN  L   L+  +D+  +     +   ++++  +TP+     +GGQ    +S K CSF 
Sbjct: 274 QDNHELLCCLRKKLDEEDR----GTNPPNMQDDAVTPTVTDSIFGGQLSSHISCKCCSFS 329

Query: 420 GANENVWHVLEVHPSSPAE 476
             +   +H L V P  P +
Sbjct: 330 SVSHVAFHDLSV-PLPPTQ 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,661
Number of Sequences: 37544
Number of extensions: 298587
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)