Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D11
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             30   1.1  
SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  

>SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 412 EQNFILTPSNPCPPQLALGVIITSLTDCVLLLYISIFIG---LSTLAFNNSFNVSLSWSS 242
           EQ  +    N  PP++    +   +  C+L+ ++S  I    +ST AF  SFN    WS 
Sbjct: 14  EQVRLFENLNITPPEIYTWAVNNKMYSCILIFFLSNMIEGQLISTGAFEVSFNDMPVWSK 73

Query: 241 L 239
           L
Sbjct: 74  L 74


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 463 DG*TSNTCHTFSFAPSKEQNFILTPSNPCPP-QLALGVIITSLTDC 329
           DG T N C   S+ PSK Q        PCPP   +     T+L+DC
Sbjct: 485 DGVTGNVCPAGSYCPSKSQ-----MHTPCPPGTFSNSTQNTALSDC 525


>SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1384

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 159 LRVQDGSPGQKANLEPFFDFIVAIENTRLDQDNDTLKELLKANVDKPIKML 311
           LRV+ G  G    L   F+ I+     +LDQD +  KE L+ NV+   K +
Sbjct: 435 LRVK-GKDGLSGQLREEFEKILNEHKRKLDQDYEQEKENLRLNVESQRKKI 484


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +3

Query: 138  GCEGYHVLRVQDGSPGQKANLEPFFDFIVAIENTRLDQDNDTLKELLKANVDKPIKMLIY 317
            GC+  HV+ V+DGSP ++A +    DFI+ +    +          L      PIK+ + 
Sbjct: 2680 GCDP-HVIVVEDGSPAERAGVRK-GDFILQVNGNAVKGLPHFQIVRLIITAASPIKLTLK 2737

Query: 318  SSKTQSVREVMITPSAN 368
                +S R + +    N
Sbjct: 2738 PGSERSSRSMPLEVDEN 2754


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,530,336
Number of Sequences: 59808
Number of extensions: 341371
Number of successful extensions: 918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)