Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D11
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel...    29   1.5  
At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel...    29   1.5  
At1g14685.3 68414.m01750 expressed protein                             29   1.5  
At1g14685.2 68414.m01749 expressed protein                             29   1.5  
At1g14685.1 68414.m01748 expressed protein                             29   1.5  
At5g44930.2 68418.m05510 exostosin family protein contains Pfam ...    29   2.0  
At5g44930.1 68418.m05509 exostosin family protein contains Pfam ...    29   2.0  
At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identi...    29   2.7  
At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3 (...    29   2.7  
At5g51550.1 68418.m06392 phosphate-responsive 1 family protein s...    28   3.6  
At4g15320.1 68417.m02344 cellulose synthase family protein simil...    28   3.6  
At5g11370.1 68418.m01327 hypothetical protein various predicted ...    28   4.7  
At1g05140.1 68414.m00517 membrane-associated zinc metalloproteas...    28   4.7  
At5g32410.2 68418.m03816 hypothetical protein                          27   8.3  
At5g15650.1 68418.m01831 reversibly glycosylated polypeptide-2 (...    27   8.3  

>At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 593

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 352 IITSLTDCVLLLYISIFIGLSTLA-FNNSFNVSLSWSSLVFSIATIKS 212
           +I+S +  V +LY  IF GL TL+ F N    + +W  ++FSI  + S
Sbjct: 257 VISSNSLAVKILY-PIFWGLMTLSTFANDLEPTSNWLEVIFSIVMVLS 303


>At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 726

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 352 IITSLTDCVLLLYISIFIGLSTLA-FNNSFNVSLSWSSLVFSIATIKS 212
           +I+S +  V +LY  IF GL TL+ F N    + +W  ++FSI  + S
Sbjct: 390 VISSNSLAVKILY-PIFWGLMTLSTFANDLEPTSNWLEVIFSIVMVLS 436


>At1g14685.3 68414.m01750 expressed protein
          Length = 279

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 456 EPPIHATHFHLHLQKNKILY*HPVTPVLPN 367
           EPPIH ++  ++ QK+K     PVT   PN
Sbjct: 58  EPPIHMSYNWINQQKDKFFNMLPVTTATPN 87


>At1g14685.2 68414.m01749 expressed protein
          Length = 279

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 456 EPPIHATHFHLHLQKNKILY*HPVTPVLPN 367
           EPPIH ++  ++ QK+K     PVT   PN
Sbjct: 58  EPPIHMSYNWINQQKDKFFNMLPVTTATPN 87


>At1g14685.1 68414.m01748 expressed protein
          Length = 279

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 456 EPPIHATHFHLHLQKNKILY*HPVTPVLPN 367
           EPPIH ++  ++ QK+K     PVT   PN
Sbjct: 58  EPPIHMSYNWINQQKDKFFNMLPVTTATPN 87


>At5g44930.2 68418.m05510 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 443

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 446 YMPHIFICTFKRTKFYTDTQ*PLSSPISTRRNHHFPY*LRFTAIY 312
           ++  +F+ TF    FY+D+     + + +R + HFP   R T +Y
Sbjct: 24  FLVFVFVNTFFYPSFYSDSGSIRRNLVDSRESFHFPGNFRKTKVY 68


>At5g44930.1 68418.m05509 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 443

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 446 YMPHIFICTFKRTKFYTDTQ*PLSSPISTRRNHHFPY*LRFTAIY 312
           ++  +F+ TF    FY+D+     + + +R + HFP   R T +Y
Sbjct: 24  FLVFVFVNTFFYPSFYSDSGSIRRNLVDSRESFHFPGNFRKTKVY 68


>At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identical
           to GI:1742952 (gb|AAC05742.1)
          Length = 775

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -3

Query: 367 LALGVIITSLTDCVLLLYISIFIGLSTLAFNNSFNVSL 254
           ++L VI   LT+ +LLL I++F+ L      +SFN+S+
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSI 563


>At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3
           (RGP3) nearly identical to reversibly glycosylated
           polypeptide-3 [Arabidopsis thaliana] GI:11863238;
           contains non-consensus GA-donor splice site at intron 2
          Length = 362

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 144 EGYHVLRVQDGSPGQKANLEPFFDF 218
           E YH++ VQDG P +  N+   FD+
Sbjct: 39  EQYHLIIVQDGDPSKVINIPVGFDY 63


>At5g51550.1 68418.m06392 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 337

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 444 VLEVHPSSPAEIAGLRPFSDYXIGADSIMHESE 542
           VL V  +SPA++ G RP+     G+D I   S+
Sbjct: 12  VLTVFLTSPAQVIGYRPYPPKTNGSDQIFDASK 44


>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +3

Query: 162 RVQDGSPGQKANLEPFFDFIVAIENTRLDQDNDTLKELLKANVDKPIKMLIYSSKTQSVR 341
           +V+D + G    L+   DF  A  NT+ +  +  +K LLK  +   +++ +  SK   + 
Sbjct: 218 KVEDAT-GDSHWLDADDDF-EAFSNTKPNDHSTIVKVLLKLFLKTTVRVFVQFSKVMYIL 275

Query: 342 EVMITPSANWGGQG 383
           +++I    N GG G
Sbjct: 276 KLIIVVWENKGGVG 289


>At5g11370.1 68418.m01327 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 311

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 40  ELIYSEDIFYREIEFLYYKYQWVHPRAPKYPEEGAKDIMYCGFKTVHQVRRRILSHFLT 216
           E +Y +DI + E+E L ++     PR+       + D ++C +K +  V + +LS   T
Sbjct: 183 EDLYGDDIVFNELEHLKFRISRAVPRSMANVVGDSMDTLFC-WKQMIDVPQCLLSSLQT 240


>At1g05140.1 68414.m00517 membrane-associated zinc metalloprotease,
           putative similar to Hypothetical zinc metalloprotease
           All3971 (SP:Q8YQ64) [strain PCC 7120] {Anabaena sp.};
           Similar to Synechocystis hypothetical protein
           (gb|D90908);contains Pfam PF00595: PDZ domain (Also
           known as DHR or GLGF); contains TIGRFAM TIGR00054:
           membrane-associated zinc metalloprotease, putative
          Length = 441

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 213 DFIVAIENTRLDQD-NDTLKELLKANVDKPI-KMLIYSSKTQSVREVMITPSANWGGQGL 386
           D I+A++ T L    +D++ +++      P   +L+   + +   E+ ITP  ++ G G 
Sbjct: 227 DVILAVDGTELSNSGSDSVSKVVDVVKRNPEHNVLLRIERGKESFEIRITPDKSFDGTGK 286

Query: 387 LGVSI 401
           +GV +
Sbjct: 287 IGVQL 291


>At5g32410.2 68418.m03816 hypothetical protein
          Length = 123

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 377 SSPISTRRNHHFPY*LRFTAIY*HLY 300
           S+P S+RR+HHF   L     Y HLY
Sbjct: 31  STPWSSRRHHHFSPPLDTLVEYHHLY 56


>At5g15650.1 68418.m01831 reversibly glycosylated polypeptide-2
           (RGP2) identical to reversibly glycosylated
           polypeptide-2 [Arabidopsis thaliana] GI:2317731
          Length = 360

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 150 YHVLRVQDGSPGQKANLEPFFDF 218
           YH++ VQDG P +K ++   +D+
Sbjct: 45  YHLIIVQDGDPSKKIHVPEGYDY 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,774,220
Number of Sequences: 28952
Number of extensions: 246041
Number of successful extensions: 700
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)