Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D10
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1030 + 21838282-21838593                                         29   3.7  
11_01_0797 - 7006491-7006531,7006717-7006963                           28   6.5  
01_06_0251 - 27885236-27885775,27887383-27887529                       28   6.5  
05_01_0499 - 4166891-4166942,4167191-4167510                           27   8.5  

>04_03_1030 + 21838282-21838593
          Length = 103

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 121 QRRAAESAAATHPLRRGPSGLTRRAAGKPAPSPC 20
           +R A ES A++   RRG  G T      PA  PC
Sbjct: 53  RRDAEESTASSQAKRRGAKGSTAGTGRGPATRPC 86


>11_01_0797 - 7006491-7006531,7006717-7006963
          Length = 95

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 166 GPLQL-HRKKAWGRSVQRRAAESAAATHPLRRGPSGLTRRAAGKPAPSP 23
           G L++  R++  G    R +  SAAAT P    P+G    AA +P+PSP
Sbjct: 13  GELEVGRRRRGDGGGKWRGSRASAAATSP-PPDPAGGEAVAAAEPSPSP 60


>01_06_0251 - 27885236-27885775,27887383-27887529
          Length = 228

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 130 RSVQRRAAESAAATHPLRRGPSGLTRRAAGKPAPS 26
           R   RR A     T P R+GP+G  RRAA    P+
Sbjct: 196 RHPHRREAHGGGGTSPHRQGPAG--RRAAASRRPT 228


>05_01_0499 - 4166891-4166942,4167191-4167510
          Length = 123

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 95  RDASSTARTFGTDSEGGGEAGAF 27
           R A+ T R FGT + GGG+ G F
Sbjct: 68  RHAAFTRRRFGTGTGGGGDDGFF 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,592
Number of Sequences: 37544
Number of extensions: 189804
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)