Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D10
         (593 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126449-1|AAI26450.1|  360|Homo sapiens LSM11, U7 small nuclear...    32   1.8  
BC051353-1|AAH51353.1|  353|Homo sapiens LSM11 protein protein.        32   1.8  
AK095592-1|BAC04581.1|  360|Homo sapiens protein ( Homo sapiens ...    32   1.8  
AL590095-1|CAH73318.1|  894|Homo sapiens Scm-like with four mbt ...    29   9.4  
AL158046-3|CAI19142.1|  894|Homo sapiens Scm-like with four mbt ...    29   9.4  
AL139125-3|CAI18944.1|  894|Homo sapiens Scm-like with four mbt ...    29   9.4  
AL138771-1|CAI21746.1|  894|Homo sapiens Scm-like with four mbt ...    29   9.4  
AB046837-1|BAB13443.1|  904|Homo sapiens KIAA1617 protein protein.     29   9.4  

>BC126449-1|AAI26450.1|  360|Homo sapiens LSM11, U7 small nuclear
           RNA associated protein.
          Length = 360

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 133 GRSVQRRAAESAAATHPLRRGPSGLTRRAAGKPAPSP 23
           GR   R    +A +  P   GPSG TRR    PAP P
Sbjct: 71  GRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDP 107


>BC051353-1|AAH51353.1|  353|Homo sapiens LSM11 protein protein.
          Length = 353

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 133 GRSVQRRAAESAAATHPLRRGPSGLTRRAAGKPAPSP 23
           GR   R    +A +  P   GPSG TRR    PAP P
Sbjct: 64  GRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDP 100


>AK095592-1|BAC04581.1|  360|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38273 fis, clone FCBBF3003305. ).
          Length = 360

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 133 GRSVQRRAAESAAATHPLRRGPSGLTRRAAGKPAPSP 23
           GR   R    +A +  P   GPSG TRR    PAP P
Sbjct: 71  GRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDP 107


>AL590095-1|CAH73318.1|  894|Homo sapiens Scm-like with four mbt
           domains 2 protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 118 RRAAESAAATHPLRRGPSGLTRRAAGKPAPS 26
           RRA    + + P+RR P   TRR  G PA S
Sbjct: 758 RRAVTLRSGSEPVRRPPPERTRRGRGAPAAS 788


>AL158046-3|CAI19142.1|  894|Homo sapiens Scm-like with four mbt
           domains 2 protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 118 RRAAESAAATHPLRRGPSGLTRRAAGKPAPS 26
           RRA    + + P+RR P   TRR  G PA S
Sbjct: 758 RRAVTLRSGSEPVRRPPPERTRRGRGAPAAS 788


>AL139125-3|CAI18944.1|  894|Homo sapiens Scm-like with four mbt
           domains 2 protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 118 RRAAESAAATHPLRRGPSGLTRRAAGKPAPS 26
           RRA    + + P+RR P   TRR  G PA S
Sbjct: 758 RRAVTLRSGSEPVRRPPPERTRRGRGAPAAS 788


>AL138771-1|CAI21746.1|  894|Homo sapiens Scm-like with four mbt
           domains 2 protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 118 RRAAESAAATHPLRRGPSGLTRRAAGKPAPS 26
           RRA    + + P+RR P   TRR  G PA S
Sbjct: 758 RRAVTLRSGSEPVRRPPPERTRRGRGAPAAS 788


>AB046837-1|BAB13443.1|  904|Homo sapiens KIAA1617 protein protein.
          Length = 904

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 118 RRAAESAAATHPLRRGPSGLTRRAAGKPAPS 26
           RRA    + + P+RR P   TRR  G PA S
Sbjct: 768 RRAVTLRSGSEPVRRPPPERTRRGRGAPAAS 798


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,383,341
Number of Sequences: 237096
Number of extensions: 1031872
Number of successful extensions: 2511
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2511
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)