Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D10
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27760.3 68414.m03393 interferon-related developmental regula...    27   7.1  
At1g27760.2 68414.m03394 interferon-related developmental regula...    27   7.1  
At1g27760.1 68414.m03392 interferon-related developmental regula...    27   7.1  

>At1g27760.3 68414.m03393 interferon-related developmental regulator
           family protein / IFRD protein family contains Pfam
           PF05004: Interferon-related developmental regulator
           (IFRD); similar to IFR1 protein GI:16580630 [Gallus
           gallus]; similar to Interferon-related developmental
           regulator 1  (TPA induced sequence 7) (TIS7 protein)
           (SP:P19182) {Mus musculus}
          Length = 441

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 162 LYSFTEKKLGGGRFSDGQR 106
           ++SFT KK+GGG+ S+ ++
Sbjct: 382 VFSFTPKKIGGGKLSNDEK 400


>At1g27760.2 68414.m03394 interferon-related developmental regulator
           family protein / IFRD protein family contains Pfam
           PF05004: Interferon-related developmental regulator
           (IFRD); similar to IFR1 protein GI:16580630 [Gallus
           gallus]; similar to Interferon-related developmental
           regulator 1  (TPA induced sequence 7) (TIS7 protein)
           (SP:P19182) {Mus musculus}
          Length = 426

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 162 LYSFTEKKLGGGRFSDGQR 106
           ++SFT KK+GGG+ S+ ++
Sbjct: 367 VFSFTPKKIGGGKLSNDEK 385


>At1g27760.1 68414.m03392 interferon-related developmental regulator
           family protein / IFRD protein family contains Pfam
           PF05004: Interferon-related developmental regulator
           (IFRD); similar to IFR1 protein GI:16580630 [Gallus
           gallus]; similar to Interferon-related developmental
           regulator 1  (TPA induced sequence 7) (TIS7 protein)
           (SP:P19182) {Mus musculus}
          Length = 437

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 162 LYSFTEKKLGGGRFSDGQR 106
           ++SFT KK+GGG+ S+ ++
Sbjct: 378 VFSFTPKKIGGGKLSNDEK 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,709,178
Number of Sequences: 28952
Number of extensions: 151543
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)