Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_D09
(221 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 34 0.002
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 34 0.003
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 24 2.4
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 24 3.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 3.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 23 4.1
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 23 5.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 23 7.2
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 22 9.5
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 22 9.5
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 22 9.5
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 22 9.5
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 34.3 bits (75), Expect = 0.002
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 80 VLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDN 211
V+L L+L +I DF G E+L LNP VP LVD+
Sbjct: 18 VVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDH 61
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 33.9 bits (74), Expect = 0.003
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 101 LDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDN 211
LDL V+F+ SPE+L LNP VP L+D+
Sbjct: 25 LDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDH 61
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 16 FRTFEDDFGYPRDRSFASL*HRAVN 90
F +FEDDF D S+ HR N
Sbjct: 174 FSSFEDDFEIDPDTDLNSILHRKQN 198
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 14 HFARLKMTLDIHVTEASPPCSTVL 85
H ARLK+ +D +VT+ S V+
Sbjct: 1706 HMARLKLPVDDYVTDTSTVLDQVI 1729
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -2
Query: 145 AVSEIDYDFIYFEVQYCSS*QHGATRRRSFGHVDIQSHLQ 26
+VS++ + +Y++ +Y + Q +RS+ HV +++LQ
Sbjct: 404 SVSDLYSERLYYKQKYEQTCQEVERLQRSYNHVMEEANLQ 443
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 50 VTEASPPCSTVLLTAAILDLKINKIVVDFANGVHL 154
+T+ASP TVL + +++ K + N H+
Sbjct: 747 LTQASPEAKTVLEQHRLSEMRKTKKQTELTNSAHV 781
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 4 ISVTFRTFEDDFGYPRD 54
+S +F TFEDDF P D
Sbjct: 583 MSKSFDTFEDDFLDPMD 599
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 22.6 bits (46), Expect = 7.2
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = -2
Query: 160 WRKVHAVSEIDYDFIYFEVQY 98
W + H +SE+D+ +++ Y
Sbjct: 454 WERFHKLSEVDWKKAFYKTFY 474
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 158 PEYLKLNPQHTVPILVDN 211
P Y KL+P PI+VD+
Sbjct: 40 PAYTKLSPLGKSPIVVDD 57
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 216 KSLSTRIGTVCCGL 175
K+L T IGTVC G+
Sbjct: 9 KALFTGIGTVCVGV 22
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 140 NGVHLSPEYLKLNPQHTVPILVDND 214
N HL +Y+KL I+V+ND
Sbjct: 212 NNSHLLGDYVKLEMLEKERIVVEND 236
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 131 DFANGVHLSPEYLKLNPQHTVPILV 205
DF++ PE++KL +H I++
Sbjct: 97 DFSHHPKYLPEFIKLQKEHNYDIVL 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 957,302
Number of Sequences: 5004
Number of extensions: 14790
Number of successful extensions: 37
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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