Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D09
         (221 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical pr...    27   1.4  
U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...    27   1.8  
U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...    27   1.8  
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...    27   1.8  
Z54342-13|CAH60747.1|  123|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    26   4.2  
AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    25   7.3  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical
           protein F35H10.7 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +2

Query: 65  PPCSTVLLTAAI----LDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILV 205
           P C+T + T+A     LD    K    F N +HL+      NP  T+   +
Sbjct: 318 PLCNTNIYTSATSPQPLDKMAEKFTAQFGNTIHLAAGLAHFNPPKTLDTFI 368


>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 5   SLLHFARLKMTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQ 184
           S LH    +   D    + +  CS    TA +LD    K+V ++     +SP +L  +PQ
Sbjct: 334 STLHTEEAREVFDKLCRDNNVDCSAPRTTARLLD----KLVGEYLESTFISPTFLIGHPQ 389

Query: 185 HTVPI 199
              P+
Sbjct: 390 IMSPL 394


>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 5   SLLHFARLKMTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQ 184
           S LH    +   D    + +  CS    TA +LD    K+V ++     +SP +L  +PQ
Sbjct: 416 STLHTEEAREVFDKLCRDNNVDCSAPRTTARLLD----KLVGEYLESTFISPTFLIGHPQ 471

Query: 185 HTVPI 199
              P+
Sbjct: 472 IMSPL 476


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 5   SLLHFARLKMTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQ 184
           S LH    +   D    + +  CS    TA +LD    K+V ++     +SP +L  +PQ
Sbjct: 392 STLHTEEAREVFDKLCRDNNVDCSAPRTTARLLD----KLVGEYLESTFISPTFLIGHPQ 447

Query: 185 HTVPI 199
              P+
Sbjct: 448 IMSPL 452


>Z54342-13|CAH60747.1|  123|Caenorhabditis elegans Hypothetical
           protein C08H9.3b protein.
          Length = 123

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -2

Query: 208 IHQNWDGVLWIKLQIFWRKVHAVSE--IDYD--FIYFEVQYCS 92
           +H+NW  V W +    W    A SE  +DY   F YFE+   S
Sbjct: 32  VHRNWMAVTWQRPLCEW-YTEATSEWTLDYPPFFAYFELGLAS 73


>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -2

Query: 208 IHQNWDGVLWIKLQIFWRKVHAVSE--IDYD--FIYFEVQYCS 92
           +H+NW  V W +    W    A SE  +DY   F YFE+   S
Sbjct: 32  VHRNWMAVTWQRPLCEW-YTEATSEWTLDYPPFFAYFELGLAS 73


>AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical
           protein Y71F9AR.3 protein.
          Length = 746

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 193 DGVLWIKLQIFWRKVHAVSEIDYDFI 116
           D VL++K+  FW   H  +++  DFI
Sbjct: 714 DPVLFLKVGSFWLVAHRQADVSDDFI 739


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 5   SLLHFARLKMTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLK 172
           S LH  R  + L + +  A+   +T+L+  +++ +   KI   F NG H   E L+
Sbjct: 27  SFLHRTRFLLLLLVILLNATVYSNTILINFSVICMSEEKISTMF-NGSHNDYEVLR 81


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 177 LSFKYSGERCTPLAKSTTILFILRSNIAAVNSTVLQGGEASVT 49
           LS++ SGE       STT+ +   +N +AV   V++    S T
Sbjct: 27  LSYEGSGEAVEDPEPSTTVDYFNAANNSAVEDAVVESSSNSST 69


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 198 IGTVCCGLSFKYSGERCTPLAKSTT 124
           I  +C G +F Y G+ CT +    T
Sbjct: 590 INGICKGFTFVYPGDLCTDITSRCT 614


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 198 IGTVCCGLSFKYSGERCTPLAKSTT 124
           I  +C G +F Y G+ CT +    T
Sbjct: 590 INGICKGFTFVYPGDLCTDITSRCT 614


>U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical
           protein T24C12.3 protein.
          Length = 651

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 50  VTEASPPCSTVLLTAAILDLKINKIVVDFANGV 148
           VT ASP  +  L  A +  + ++  V+D A+GV
Sbjct: 512 VTAASPNANEFLKWAKLCHVSVDPSVIDTADGV 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,368,336
Number of Sequences: 27780
Number of extensions: 83935
Number of successful extensions: 228
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)