Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_D09
(221 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 43 2e-05
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 41 1e-04
At5g41210.1 68418.m05008 glutathione S-transferase (GST10) ident... 39 5e-04
At2g30860.1 68415.m03761 glutathione S-transferase, putative ide... 37 0.002
At2g47730.1 68415.m05960 glutathione S-transferase 6 (GST6) iden... 36 0.005
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ... 36 0.005
At2g30870.1 68415.m03762 glutathione S-transferase, putative sup... 33 0.026
At2g02390.2 68415.m00177 glutathione S-transferase zeta 1 (GSTZ1... 32 0.045
At2g02390.1 68415.m00178 glutathione S-transferase zeta 1 (GSTZ1... 32 0.045
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 32 0.059
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 30 0.18
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 30 0.18
At2g02380.1 68415.m00176 glutathione S-transferase, putative sim... 30 0.24
At3g62760.1 68416.m07050 glutathione S-transferase, putative Glu... 28 0.96
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR... 27 1.7
At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein, p... 27 1.7
At2g02390.3 68415.m00179 glutathione S-transferase zeta 1 (GSTZ1... 27 2.2
At1g14830.1 68414.m01774 dynamin-like protein C (DL1C) nearly id... 27 2.2
At1g02950.1 68414.m00262 glutathione S-transferase, putative sim... 26 2.9
At5g49740.1 68418.m06159 ferric reductase-like transmembrane com... 25 5.1
At3g06560.1 68416.m00762 poly (A) polymerase family protein simi... 25 5.1
At2g02930.1 68415.m00241 glutathione S-transferase, putative 25 5.1
At1g52120.1 68414.m05881 jacalin lectin family protein simiilar ... 25 5.1
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim... 25 5.1
At1g02940.1 68414.m00261 glutathione S-transferase, putative sim... 25 5.1
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put... 25 6.8
At1g31140.1 68414.m03810 MADS-box protein (AGL63) similar to gb|... 25 6.8
At1g02920.1 68414.m00259 glutathione S-transferase, putative sim... 25 6.8
At4g23590.1 68417.m03398 aminotransferase class I and II family ... 25 9.0
At4g02520.1 68417.m00345 glutathione S-transferase, putative 25 9.0
At3g24840.1 68416.m03116 SEC14 cytosolic factor, putative / phos... 25 9.0
At1g65720.1 68414.m07459 expressed protein 25 9.0
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot... 25 9.0
At1g12410.1 68414.m01434 ATP-dependent Clp protease proteolytic ... 25 9.0
At1g02930.1 68414.m00260 glutathione S-transferase, putative sim... 25 9.0
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 43.2 bits (97), Expect = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +2
Query: 32 MTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD 208
M L ++ S P VL+ + +++ ++I++ AN LSPE+ +NP VP +VD
Sbjct: 1 MKLKVYADRMSQPSRAVLIFCKVNEIQFDEILIYLANRQQLSPEFKDINPMGKVPAIVD 59
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +2
Query: 32 MTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD 208
M L ++ S P VL+ + +++ ++I++ LSPE+ ++NP VP +VD
Sbjct: 1 MKLKVYADRMSQPSRAVLIFCKVNEIQFDEILISLGKRQQLSPEFKEINPMGKVPAIVD 59
>At5g41210.1 68418.m05008 glutathione S-transferase (GST10)
identical to glutathione transferase AtGST 10
[Arabidopsis thaliana] GI:4049401
Length = 245
Score = 38.7 bits (86), Expect = 5e-04
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 32 MTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD 208
M L ++ S P V++ + ++ +++++ A LSPE+ +NP VP +VD
Sbjct: 2 MKLKVYADRMSQPSRAVIIFCKVNGIQFDEVLISLAKRQQLSPEFKDINPLGKVPAIVD 60
>At2g30860.1 68415.m03761 glutathione S-transferase, putative
identical to GB:Y12295
Length = 215
Score = 36.7 bits (81), Expect = 0.002
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 32 MTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDN 211
M L ++ + P L+T + I VD G H P YL L P TVP +VD
Sbjct: 1 MVLKVYGPHFASP-KRALVTLIEKGVAFETIPVDLMKGEHKQPAYLALQPFGTVPAVVDG 59
Query: 212 DF 217
D+
Sbjct: 60 DY 61
>At2g47730.1 68415.m05960 glutathione S-transferase 6 (GST6)
identical to GB:X95295. Based on identical cDNA hits,
the translation is now 40 AAs longer at the N-terminal,
and start of exon2 is also corrected.
Length = 263
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +2
Query: 35 TLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDND 214
++ +H S VL T DL+ I VD G H +L LNP +P L D D
Sbjct: 51 SIKVHGVPMSTATMRVLATLYEKDLQFELIPVDMRAGAHKQEAHLALNPFGQIPALEDGD 110
>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative similar to elongation factor 1B
gamma GI:3868758 from [Oryza sativa]
Length = 413
Score = 35.5 bits (78), Expect = 0.005
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 32 MTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGV-HLSPEYLKLNPQHTVPIL 202
M L +H + + + L+ A +KI + DF GV + SPE+LK+NP VP+L
Sbjct: 1 MALVMHTYKGNKGANKALIAAEYAGVKIEESA-DFQMGVTNKSPEFLKMNPIGKVPVL 57
>At2g30870.1 68415.m03762 glutathione S-transferase, putative
supported by cDNA GI:443698 GB:D17673
Length = 215
Score = 33.1 bits (72), Expect = 0.026
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 128 VDFANGVHLSPEYLKLNPQHTVPILVDNDF 217
VD G PEYL + P +P+LVD D+
Sbjct: 32 VDLMKGEQRQPEYLAIQPFGKIPVLVDGDY 61
>At2g02390.2 68415.m00177 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 191
Score = 32.3 bits (70), Expect = 0.045
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 80 VLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDND 214
V + A+ L I V+ G ++ K+NP TVP LVD D
Sbjct: 23 VRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGD 67
>At2g02390.1 68415.m00178 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 221
Score = 32.3 bits (70), Expect = 0.045
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 80 VLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDND 214
V + A+ L I V+ G ++ K+NP TVP LVD D
Sbjct: 23 VRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGD 67
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 31.9 bits (69), Expect = 0.059
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 32 MTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGV-HLSPEYLKLNPQHTVPIL 202
M L +H + + L+ A + ++I+ + DF GV + +P +LK+NP VP+L
Sbjct: 1 MALVLHTYKGNKSAEKALIAAEYVGVQID-VPSDFQMGVTNKTPAFLKMNPIGKVPVL 57
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 89 TAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDND 214
T I DL+ K +++FA+ V L+ NP T I+V +D
Sbjct: 196 TTVIWDLRKQKPIINFADSVRRRCSVLQWNPNVTTQIMVASD 237
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 89 TAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDND 214
T I DL+ K +++FA+ V L+ NP T I+V +D
Sbjct: 196 TTVIWDLRKQKPIINFADSVRRRCSVLQWNPNVTTQIMVASD 237
>At2g02380.1 68415.m00176 glutathione S-transferase, putative
similar to gi:167970 gb:AAA72320 gb:AY052332
Length = 223
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 80 VLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDND 214
V + + L I V+ G ++ K+NP TVP LVD D
Sbjct: 26 VRIALTLKGLDYEYIPVNLLKGDQSDSDFKKINPMGTVPALVDGD 70
>At3g62760.1 68416.m07050 glutathione S-transferase, putative
Glutathione transferase III(b) - Zea mays, EMBL:AJ010296
Length = 219
Score = 27.9 bits (59), Expect = 0.96
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 32 MTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDN 211
M + ++ E S + VLL + + + V+ H P +L +NP VP L D+
Sbjct: 1 MAMKLYGDEMSACVARVLLCLHEKNTEFELVPVNLFACHHKLPSFLSMNPFGKVPALQDD 60
Query: 212 D 214
D
Sbjct: 61 D 61
>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 981
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 171 FKYSGERCTPLAKSTTI 121
F SGERC PLA TTI
Sbjct: 58 FSQSGERCPPLAILTTI 74
>At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein,
putative (DRT100) similar to
DNA-damage-repair/toleration protein DRT100 [Precursor]
SWISS-PROT:Q00874, NCBI_gi:5701788; contains multiple
LRR repeats Pfam profile: PF00560
Length = 372
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 50 VTEASPPCSTVLLTAAILDLKINKI 124
+T PPC T L + ILDL NKI
Sbjct: 123 ITGEIPPCITSLASLRILDLAGNKI 147
>At2g02390.3 68415.m00179 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 228
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 161 EYLKLNPQHTVPILVDND 214
++ K+NP TVP LVD D
Sbjct: 57 DFKKINPMGTVPALVDGD 74
>At1g14830.1 68414.m01774 dynamin-like protein C (DL1C) nearly
identical to dynamin-like protein C [Arabidopsis
thaliana] GI:19569772
Length = 614
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 98 ILDLKINKIVVDFANGVHLSPEYLKLNPQH 187
++D++ + + V+F +HL PE K NP++
Sbjct: 480 LVDMESSYLTVEFFRKLHLEPEKEKPNPRN 509
>At1g02950.1 68414.m00262 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 243
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +2
Query: 29 KMTLDIHVTEASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD 208
K+ +H S VL L I V G H + +L LNP VP+ D
Sbjct: 22 KLGYKVHGDPFSTNTRRVLAVLHEKRLSYEPITVKLQTGEHKTEPFLSLNPFGQVPVFED 81
>At5g49740.1 68418.m06159 ferric reductase-like transmembrane
component family protein similar to ferric-chelate
reductase (FRO1) [Pisum sativum] GI:15341529; contains
Pfam profile PF01794: Ferric reductase like
transmembrane componenent
Length = 747
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 5 SLLHFARLKMTLDIH--VTEASPPC 73
S+ HF K+ L+IH VT S PC
Sbjct: 517 SICHFFSKKLNLEIHIYVTRQSEPC 541
>At3g06560.1 68416.m00762 poly (A) polymerase family protein similar
to SP|Q9BWT3 Poly(A) polymerase gamma (EC 2.7.7.19) (PAP
gamma) (Polynucleotide adenylyltransferase gamma) (SRP
RNA 3' adenylating enzyme) {Homo sapiens}; contains Pfam
profiles PF04926: Poly(A) polymerase predicted RNA
binding domain, PF04928: Poly(A) polymerase central
domain
Length = 483
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 119 KIVVDFANGVHLSPEYLKLN 178
KIV +F G +L+ +YLKLN
Sbjct: 281 KIVAEFLLGHNLTKDYLKLN 300
>At2g02930.1 68415.m00241 glutathione S-transferase, putative
Length = 212
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +2
Query: 59 ASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDND 214
AS VL+ +L + V+ +G H +L NP VP D D
Sbjct: 11 ASTSTRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGD 62
>At1g52120.1 68414.m05881 jacalin lectin family protein simiilar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 450
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 195 GTVCCGLSFKYSGERCTP-LAKSTTILFILRSNIAAV 88
GT+ L+FK S R +P L K++ F+L S A+
Sbjct: 377 GTLITSLTFKTSNNRTSPILGKASNKTFLLESKGCAL 413
>At1g02950.2 68414.m00263 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 245
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 107 LKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD 208
L I V G H + +L LNP VP+ D
Sbjct: 50 LSYEPITVKLQTGEHKTEPFLSLNPFGQVPVFED 83
>At1g02940.1 68414.m00261 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 256
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 107 LKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD 208
L + I V+ G P +L +NP VP+ +D
Sbjct: 62 LSYDPITVNLIAGDQKKPSFLAINPFGQVPVFLD 95
>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 894
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 195 GTVCCGLSFKYSGERCTPLAKSTTILFILRSNIAAVNSTVLQ 70
G C L +K+SG CT + T + L + + + +L+
Sbjct: 385 GDPCVPLDYKWSGVNCTYVDNETPKIISLDLSTSGLTGEILE 426
>At1g31140.1 68414.m03810 MADS-box protein (AGL63) similar to
gb|Y15008 M79 protein (MADS box) from oryza sativa and
contains SRF transcription factor domain PF|00319
Length = 213
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 178 IKLQIFWRKVHAVSEIDYD-FIYFEVQYCSS*QHGATRRRSFGH 50
+KL + H ++ + YD + FE+ SS QH R+ F H
Sbjct: 105 LKLNLQLYDGHGLNLLTYDELLSFELHLESSLQHARARKSEFMH 148
>At1g02920.1 68414.m00259 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]; supported by cDNA GI:443697.
Length = 209
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +2
Query: 59 ASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDNDF 217
AS VL+ +L + ++ +G H ++ NP VP D DF
Sbjct: 11 ASTATRRVLIALHEKNLDFEFVHIELKDGEHKKEPFIFRNPFGKVPAFEDGDF 63
>At4g23590.1 68417.m03398 aminotransferase class I and II family
protein similar to nicotianamine aminotransferase from
Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam
profile PF00155 aminotransferase, classes I and II
Length = 424
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 164 YLKLNPQHTVPILVDNDFC 220
+ KL+P H V I D+DFC
Sbjct: 342 WTKLDPLHFVDIEDDHDFC 360
>At4g02520.1 68417.m00345 glutathione S-transferase, putative
Length = 212
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +2
Query: 59 ASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDND 214
AS VL+ +L + V+ +G H +L NP VP D D
Sbjct: 11 ASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGD 62
>At3g24840.1 68416.m03116 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; similar to SEC14
CYTOSOLIC FACTOR (PHOSPHATIDYLINOSITOL/
PHOSPHATIDYLCHOLINE TRANSFER PROTEIN) GB:P46250 from
[Candida albicans] (Yeast (1996) 12(11), 1097-1105);
contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam
PF03765 : CRAL/TRIO, N-terminus
Length = 579
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = -2
Query: 184 LWIKLQIFWRKVHAVSEIDYDFIYFEV----QYCSS*QHGATR 68
+W ++ + WRK + V I DF+Y E QY HG R
Sbjct: 121 MWEEM-LKWRKENGVDTIIQDFVYDEYEEVQQYYPHGYHGVDR 162
>At1g65720.1 68414.m07459 expressed protein
Length = 180
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 5 SLLHFARLKMT-LDIHVTEASPPCSTVLLTAAILDLKINK--IVVDFANGVHLSPEYLK- 172
S L FA + L I + PC T L+++ L + + DF + ++ ++
Sbjct: 5 SYLRFAIAVVAFLSITTITTARPCKTFLISSYSLSITPENPNLESDFTSTRFVTVFTIRR 64
Query: 173 LNPQHTVPILVD 208
LNP H VP V+
Sbjct: 65 LNPHHVVPFFVN 76
>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
similar to SP|P22138 DNA-directed RNA polymerase I 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
2) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04563; RNA polymerase beta subunit, PF04560: RNA
polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
domain 2, PF04565: RNA polymerase Rpb2 domain 3,
PF00562: RNA polymerase Rpb2 domain 6
Length = 1114
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +2
Query: 47 HVTEASPPCSTVLLTAAILD-LKINKIVVDFANGVHLSPEYLKL---NPQHTVPILVD 208
H+T S S I D LKI K VVD G + P KL P + +L+D
Sbjct: 457 HMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLD 514
>At1g12410.1 68414.m01434 ATP-dependent Clp protease proteolytic
subunit (ClpP2) identical to nClpP2 GI:5360589 from
[Arabidopsis thaliana]
Length = 279
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 216 KSLSTRIGTVCCGLSFKYSG 157
KSL + +GT C GL++ +G
Sbjct: 152 KSLKSPVGTHCVGLAYNLAG 171
>At1g02930.1 68414.m00260 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 208
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +2
Query: 59 ASPPCSTVLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVDNDF 217
AS VL+ ++ + V+ +G H ++ NP VP D DF
Sbjct: 11 ASTATRRVLIALHEKNVDFEFVHVELKDGEHKKEPFILRNPFGKVPAFEDGDF 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,028,584
Number of Sequences: 28952
Number of extensions: 77735
Number of successful extensions: 250
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 53
effective length of database: 10,536,104
effective search space used: 210722080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -