Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D08
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0298 + 1998278-1998655,1998836-1999111,1999203-1999271,199...    27   5.6  

>02_01_0298 +
           1998278-1998655,1998836-1999111,1999203-1999271,
           1999881-2000073,2000161-2000555
          Length = 436

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 210 GPAAFHIHYIFYKYIKHLLGSY--NVVLATFGSD 305
           G    + H   +KYIKH+LGS   N+ + T G D
Sbjct: 173 GTLRAYTHAKNFKYIKHVLGSVDENIAVGTSGVD 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,473,604
Number of Sequences: 37544
Number of extensions: 105440
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)