Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D07
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   1.8  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   1.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   3.2  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    23   7.4  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 178 GWRCIRRNGGCQRKKNTFIK 237
           GW C   +   QRKK+TF K
Sbjct: 302 GWTCATCSFATQRKKSTFQK 321


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -1

Query: 109 YISNCSCKRYS--WF*KIHFQFLDLFITNSISF 17
           Y S C+    S  WF      F   FITNSI F
Sbjct: 369 YRSKCAAVATSANWFWNFLISFFTPFITNSIGF 401


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 210  PEEEEYFYKNTK 245
            P+E+EYFYK T+
Sbjct: 1639 PQEDEYFYKVTQ 1650


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -1

Query: 109 YISNCSC--KRYSWF*KIHFQFLDLFITNSISF 17
           Y S C+      +WF      F   FI+NSI F
Sbjct: 401 YRSKCAAVATASNWFWNFMISFFTPFISNSIGF 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,202
Number of Sequences: 5004
Number of extensions: 6711
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)