Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D06
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    29   0.39 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   1.6  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   3.7  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   6.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.4  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   8.4  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   8.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.4  

>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 117 SMGFSAYCDGVPDGKAFGCTPYRSTVPPTR 28
           S  F A  D   DGK FG +  +S +PPTR
Sbjct: 317 SFVFQAQNDMQDDGKGFGISNLKSFLPPTR 346


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 120 GEDVFDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIEGNEYKVTIP 275
           G++ ++  +   E  S+  EL++   D +RK  T   SSQ  +  E K+  P
Sbjct: 50  GKNGYENRKITEEGDSKSSELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDP 101


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 57   GYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSEL 161
            GY+ + F  E+H N LR  +   + F    FW+ L
Sbjct: 975  GYSVLSFFRENHKNSLRKSW---EAFKRRAFWTSL 1006


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 159 LSSELRELDNMLADFYRKF 215
           L S+L EL ++L  FY+KF
Sbjct: 421 LESQLVELQSLLTQFYQKF 439


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +1

Query: 106  EAHTSARTSSIPVGSGPNSPASYASWXXXXXXXXXXXXXXXXXLKASKAT 255
            E  +SA TSS+     P S +S +SW                   +S AT
Sbjct: 931  ETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIAT 980


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 490 SRPXLRQVSLEKRFLVRPDCKSNFRSHLRSPAMS*HPNNSSVHRPRTYEQL 338
           S+P L Q    KR    P  K+NF +   +  +S +P  ++  R  T+ Q+
Sbjct: 316 SKPSLLQTQPLKRKNYSPWYKNNFGASTPASRVSRNPYTAAQPRKHTFYQM 366


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +3

Query: 114 YFGEDVFDTG------RFWSELSSEL-RELDNMLADFYRKFPTPASSSQGIEGNEYKVTI 272
           Y   DVFD G       F+ ++      E + ML+  Y K  TP++    +E   +K + 
Sbjct: 317 YTTNDVFDMGGSYHFPNFYKKVDEYCGTEWETMLSRLYNKELTPSTDENKLEKLCFKASW 376

Query: 273 PFNLL**EGHRCQSPDRSSDGA 338
             N+L  EG      + SS+ A
Sbjct: 377 ALNVL-HEGFDVPKSNTSSNDA 397


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 156 ELSSELRELDNMLADFYRKFPT 221
           EL +EL   DN+LA   R+F T
Sbjct: 590 ELKAELNLRDNLLASMQREFET 611


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 18  LAAAVSAAPYYGMGYNQMPFHPEHHH 95
           ++ A ++AP+   GY     HPE+H+
Sbjct: 194 MSFANTSAPFSTKGYKMKYKHPEYHY 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,810
Number of Sequences: 5004
Number of extensions: 42355
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)