Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D06
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0981 + 9931542-9931606,9931779-9933105                           31   0.69 
07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,949...    27   6.4  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    27   8.5  
05_04_0202 - 19010953-19013355                                         27   8.5  

>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 48  YGMGYNQMPFHPEHHHNRLRSPY 116
           Y   Y+Q PFHP HHH     P+
Sbjct: 148 YNPYYHQEPFHPPHHHQYNPEPH 170


>07_01_1069 -
           9493001-9493176,9493269-9493300,9493405-9493499,
           9493623-9493898,9493976-9494039,9498048-9498113,
           9498283-9498413,9499722-9499859,9499964-9500079,
           9500166-9500331,9500435-9500548,9500609-9500692,
           9500995-9501073,9501134-9501337,9501999-9502096,
           9502187-9502284,9502359-9502495,9502606-9502824,
           9503541-9503743,9503856-9504005
          Length = 881

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 370 KNYLDVRTLPDCVNVNGSWTYSQGVLKIV 456
           KN+L V    DC+   G W Y+  V++++
Sbjct: 394 KNHLVVGNSEDCIPNRGRWNYNNKVVRLL 422


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 477 YVRFHWKNDF*YALTVSPTSVHIYAVRQCPNIQIILLYIALV 352
           Y+R  +  D+ Y   V     H++A+ Q P+ Q++++   LV
Sbjct: 506 YLRSEYGKDYEYDAPVKLLDKHLHAMAQSPDEQLVVVSQVLV 547


>05_04_0202 - 19010953-19013355
          Length = 800

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 73  LSIRNTITIG*EAHTSARTS-SIPVGSGPNSPA 168
           LS   T   G E  T  +TS  +PVG GP SPA
Sbjct: 119 LSFLLTDASGAEIRTHRKTSFRVPVGVGPGSPA 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,544
Number of Sequences: 37544
Number of extensions: 303978
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)