Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D06
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     31   0.53 
SB_18251| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=9.9)            29   1.6  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       28   3.8  
SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   6.6  
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       27   8.7  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             27   8.7  

>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 427 SNFRSHLRSPAMS*HPNNSSVHRPRTYEQLAPSEDRS 317
           S  +S LR P  S  P+ SS H P T +Q +PS+++S
Sbjct: 282 SRHQSSLRHPGSS-KPSTSSKHYPATIDQNSPSKNKS 317


>SB_18251| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=9.9)
          Length = 93

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 48  YGMGYNQMPFHPEHHHNRLRSP 113
           Y   Y+  PFHP HH  R R P
Sbjct: 30  YFYRYHHRPFHPHHHRIRRRPP 51


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 GHRCQSPDRSSDGASCS*VRGRC 365
           GH C  P   ++GA C+ V G+C
Sbjct: 363 GHNCAHPCNCTNGARCNAVTGQC 385


>SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 24  AAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSS 167
           A +S AP Y   +   PF P  H+      + G ++F  GR +  L S
Sbjct: 76  AGISLAPLYYTAFTNAPFPPRDHYQYYIFVFLGGELF--GRSYLVLMS 121


>SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 299

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +1

Query: 358 GDVQKNYLDVRTLP---DCVNVNGSWT 429
           GD+ +  L V T P   DCVN NGS+T
Sbjct: 257 GDIDECALGVATCPASADCVNNNGSYT 283


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 132 FDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIE 248
           FD     SE  S +REL +   D +RK  TPA+++  I+
Sbjct: 11  FDVEHRKSEYKSTVRELLSRYWDRHRKAKTPATAADRIQ 49


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 132 FDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIE 248
           FD     SE  S +REL +   D +RK  TPA+++  I+
Sbjct: 683 FDVEHRKSEYKSTVRELLSRYWDRHRKAKTPATAADRIQ 721


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,487
Number of Sequences: 59808
Number of extensions: 351560
Number of successful extensions: 892
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)