Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D06
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical ...    31   0.62 
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF025462-4|AAN72424.1|  123|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical
           protein Y62H9A.4 protein.
          Length = 212

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 3   LFVLCLAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELREL 182
           L V+  A  VSA  Y    Y  +  +P HH N   + Y   D  D+    +EL S     
Sbjct: 6   LSVIACAVVVSANQYND--YGTISHYPGHHSN---NRYSTSDSSDSSE--NELKSRSNS- 57

Query: 183 DNMLADFYRKF-PTPASSSQGIEGNEYK 263
           D    ++   + P P +++ G  GNEY+
Sbjct: 58  DERYPEYPGVYAPQPPATNYGTNGNEYR 85


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical protein
            C11E4.6 protein.
          Length = 1170

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 83   RMERHLVVPHTVVRCRRHGRSKTENK 6
            RM++ L +  T+VRCR + +  TEN+
Sbjct: 1143 RMDKSLPIEGTMVRCRHNSQQTTENQ 1168


>AF025462-4|AAN72424.1|  123|Caenorhabditis elegans Hypothetical
           protein K10F12.4b protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 432 VSPTSVHIYAVRQCPNIQIILLYIA 358
           ++P +  +Y++R CP  Q +L+Y+A
Sbjct: 94  LTPGNYRLYSMRFCPYAQRVLIYLA 118


>AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical
           protein K10F12.4a protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 432 VSPTSVHIYAVRQCPNIQIILLYIA 358
           ++P +  +Y++R CP  Q +L+Y+A
Sbjct: 94  LTPGNYRLYSMRFCPYAQRVLIYLA 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,784
Number of Sequences: 27780
Number of extensions: 245021
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)