Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D06
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf...    29   2.3  
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    29   2.3  
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    29   2.3  
At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein...    28   4.1  
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa...    28   4.1  
At4g25850.1 68417.m03718 oxysterol-binding family protein contai...    27   7.1  
At3g05680.1 68416.m00634 expressed protein                             27   7.1  
At2g25190.1 68415.m03012 expressed protein                             27   7.1  
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ...    27   7.1  
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138...    27   7.1  
At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putativ...    27   9.4  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    27   9.4  
At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to ...    27   9.4  

>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 417

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 499 HESSRPXLRQVSLEKRFL--VRPDCKSNFRSHLRSPAMS*HPNNSSVHRPRTYEQLAPSE 326
           ++  +P  + +S E+ FL  + P   S+++  L S  +S H N  + HRP      +PS 
Sbjct: 178 YKPKQPLWKHLS-EESFLSDLDPSIVSSYKKALSSKLLSNHSNTRNPHRPTKSLSCSPSS 236

Query: 325 DRS 317
           + S
Sbjct: 237 NPS 239


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 24  AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 116
           A +  +PYY  GY+ Q P  P  HH+ L  PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217



 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 42  PYYGMGYNQMPFHPE-HHHNRLRSPYF 119
           PY    +   P++P+ HHH R  SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 24  AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 116
           A +  +PYY  GY+ Q P  P  HH+ L  PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217



 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 42  PYYGMGYNQMPFHPE-HHHNRLRSPYF 119
           PY    +   P++P+ HHH R  SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232


>At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein
           similar to SP|O43196 MutS protein homolog 5 {Homo
           sapiens}; contains Pfam profile PF00488: MutS domain V
          Length = 321

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 135 DTGRFWSELSSELRELDNMLADFYRK 212
           +T RF+   +S+ RELDN+L D Y K
Sbjct: 4   ETQRFFYH-TSKTRELDNLLGDIYHK 28


>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1218

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 18   LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 179
            L    +  PY+     Q   HP  HH      Y+  DV D  R W+   ++ RE
Sbjct: 1124 LVTVTTVLPYFAHISFQRFLHPLDHHIIQEIKYYKRDVEDR-RMWTRERTKARE 1176


>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 383

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 87  VPDGKAFGCTPYRSTVPP 34
           V DGK + C+P + TVPP
Sbjct: 360 VKDGKDWDCSPLQPTVPP 377


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +3

Query: 123  EDVFDTG---RFWSELSSELRE-LDNMLADFYRKFPTPASSSQGIEGNEYKVTIP 275
            +D++  G   +FW E    L E L        RK PT  SSS+  +G    V IP
Sbjct: 1400 DDLYQRGLEDKFWWECPETLPERLPQSSLPAKRKLPTLESSSRRAKGENSSVDIP 1454


>At2g25190.1 68415.m03012 expressed protein
          Length = 240

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
 Frame = -1

Query: 502 LHESSRPXLRQVSLEKRFLVRPDCKS---NFRSHLRSPAMS*HPNNSSV--------HRP 356
           L ES +  LR  S     L      S   N RSH+R+ +   HP++SS          RP
Sbjct: 167 LSESEKKKLRNRSRSDPLLSSSPSSSTPDNHRSHIRAKSSGNHPSSSSSSSSGSKKNRRP 226

Query: 355 RTYEQLAPS 329
           +  +Q +PS
Sbjct: 227 KAQDQKSPS 235


>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 949

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 369 LYIALVLMNSLHHQKTGPGFDNDVLLIKGG*KV*SPCI 256
           + I +++M  + H+K   G DN ++L+ GG  +  P +
Sbjct: 258 MLIEIIIMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTV 295


>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 567

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 87  HHHNRLRSPYFGEDVFDTGRFWSELSSELRELDNM 191
           H+H+  R P    D++D   F S LS+++R +D +
Sbjct: 193 HYHSIWRDPSKFGDIYDEEFFVSTLSNDVRVVDTI 227


>At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putative /
           proton pump 1, putative / proton-exporting ATPase,
           putative strong similarity to SP|P20649 ATPase 1, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type; contains Pfam profile PF00690:
           Cation transporter/ATPase, N-terminus
          Length = 949

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 363 IALVLMNSLHHQKTGPGFDNDVLLIKGG*KV*SPCI 256
           I +V+M  + H+K   G DN ++L+ GG  +  P +
Sbjct: 257 IEIVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTV 292


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0,
            SP|O43520]; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1228

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 18   LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 179
            L    +  PY      Q   +P  HH      Y+G D+ D  R W+   ++ RE
Sbjct: 1134 LVTVAAVLPYVAHIAFQRFLNPLDHHIIQEIKYYGRDIED-ARLWTRERTKARE 1186


>At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to
           regulatory protein NPR1 (nonexpresser of PR genes 1,
           NPR1; noninducible immunity 1, Nim1; salicylic acid
           insensitive 1, Sai1) [Arabidopsis thaliana]
           SWISS-PROT:P93002
          Length = 593

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +3

Query: 156 ELSSELRELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPFNLL**EGHRCQSPDRSSDG 335
           EL   L +L+N +A   R FPT A ++  I   E K T  F +   E  R     R+S G
Sbjct: 421 ELKMTLLDLENRVALAQRLFPTEAQAAMEIA--EMKGTCEFIVTSLEPDRLTGTKRTSPG 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,988
Number of Sequences: 28952
Number of extensions: 231664
Number of successful extensions: 686
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)