Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D05
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               272   2e-73
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   0.87 
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   4.6  
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.1  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  272 bits (666), Expect = 2e-73
 Identities = 125/175 (71%), Positives = 142/175 (81%)
 Frame = +2

Query: 41  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 220
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR+ DG ++IN+++TWEK   
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 221 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 400
                   E+PADV VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 401 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 565
           LLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMF 175


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 413 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 508
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 389 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 538
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = -2

Query: 355 RSETSSN-WCCASVGSKFKHSTLAKCT**DNKHISWILHGDNSTSSEYKLFPCTPKINYV 179
           RS  SS  + C + G  F H            ++S I H    T S  +LF C     + 
Sbjct: 229 RSHASSRPYSCPTCGKTFSH------------YVSLIQH--KKTHSSVRLFECKKCGKHF 274

Query: 178 RTVTTAFINVRLHLEINIFRSQMGGRRKH 92
           +  +T   ++ +H +I  F  +  G+R H
Sbjct: 275 KRSSTLSTHMLIHADIRPFSCEFCGKRFH 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,579
Number of Sequences: 59808
Number of extensions: 345918
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)