Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_D04
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.042
SB_30473| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8) 29 3.7
SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40) 28 4.8
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6) 28 4.8
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 27 8.5
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/59 (52%), Positives = 41/59 (69%)
Frame = +2
Query: 62 EAFFDEYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNK 238
E +FDEYDYYNFD +++ G+ K R+KREA +TN F P GH RK++ K NTE N+
Sbjct: 2 EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNR 58
>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 35.1 bits (77), Expect = 0.042
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 74 DEYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHS-RKIVTKLVNTENNKKSNK 250
D+YD Y+FD H G K ++K+EA+++ N GHS RK + + E+ +K K
Sbjct: 5 DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRKEEK 61
>SB_30473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 125 HGGKQRTKREATEH--TNHFDPSGHSRKIVTKLVNTENNKKSN 247
HG K++ KR EH NH D S ++K+ +K N KSN
Sbjct: 191 HGAKRKRKRTKDEHKVVNHADGSDDAKKLHSK--TDTNPSKSN 231
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 50 VTMSEAFFDEYDYYNFDHDKHI 115
V+ +AF+ +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529
>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
Length = 420
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 50 VTMSEAFFDEYDYYNFDHDKHI 115
V+ +AF+ +DYY F HD ++
Sbjct: 66 VSEGKAFYGSFDYYQFPHDSNL 87
>SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 119 TGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKKSNK 250
+G GK+ K E N +P +KI T+ V NK+ +K
Sbjct: 18 SGSSGKEMRKISTEEKPNQSEPPKKVKKIKTEKVEKTTNKQQSK 61
>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
Length = 1265
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 92 NFDHDKHIFTGHGGKQRTKREATEHTNHF-DPSGHSRKIVTKLVNTENNKKSN 247
N D + I HGG+ +T + D SGHS T +NT N+ + N
Sbjct: 292 NKDITQEIMARHGGQSAGTPSSTGSPSTTPDASGHSSNSNTPPINTNNSAEQN 344
>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
Length = 244
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 101 HDKHIFTGHGGKQRTKREATEHTNHFDP----SGHSRKIVTKLVN 223
H I+T H +T R T+H N+ + H+ +I T LVN
Sbjct: 45 HAARIYTNHVNDSQTARIYTQHVNYSQTARIYTQHAARIYTNLVN 89
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = -2
Query: 300 IFLLQAIVVFIHRYIYCLLDFLLFSVFTNFVTIF------LEC-PEGSK*FVCSVASRLV 142
I + ++FI + +L +FSV F+T+F L C P S CS +S L+
Sbjct: 1159 ITVFSVTILFITVFSVIILFITVFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLL 1218
Query: 141 RCLP 130
C P
Sbjct: 1219 PCSP 1222
>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -3
Query: 530 IRHWNGVGTKID---LAGNTWFILSVASF 453
++ WNGVGT +D A WF+ + F
Sbjct: 412 VKWWNGVGTALDTTNTAATKWFVKRLEEF 440
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -1
Query: 307 LGNIPSTSHSRVYSPLHLLFIGLFVVLRIH*LRDDLSRMSRGVEVI 170
+GN+P +S S LH +F V+++ LRD +R SRGV I
Sbjct: 14 VGNLP---YSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFI 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,024,407
Number of Sequences: 59808
Number of extensions: 372180
Number of successful extensions: 937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -