Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D02
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    28   1.0  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    28   1.0  
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    27   2.3  
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    26   4.1  
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...    25   5.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.4  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   5.4  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   9.4  

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 17  FIAESPDQWTVLELNQPLYIGGVPDFDQLP 106
           F A SP  WT  + N P  I  VPD+   P
Sbjct: 187 FQAGSPYLWTRWQSNDPHLISSVPDYSARP 216


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 68  LYIGGVPDFDQLPIDLAGASGFVGCISM-----LILGNEEKNIMALALEK 202
           +Y   VPD D  P++L G +GFV C        L+ G+ +K  M   +E+
Sbjct: 89  VYDTSVPDAD--PVELVGHAGFVSCCKYVDDGHLLTGSGDKTCMFWDIEQ 136


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 104 PIDLAGASGFVGCISMLILGNEEKNIMALAL--EKENVQNCFTCAPNLCLNNGVCQEALT 277
           P+   G S       ++ +G +++ I+ L +    E ++N     PN+ +   V  E L 
Sbjct: 139 PMLATGGSAICAMEILINMGCKQEQIIFLNVIASPEGLKNVHDRFPNIRIVTAVIDEGLD 198

Query: 278 EHGYVCLCAPGFG 316
            +GY+    PG G
Sbjct: 199 NNGYI---VPGLG 208


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 213 RIVSLV--PLISVSTMVSVRKHLLSMVMCACAL 305
           R+V  V   ++  +T + +R H LSM +CA AL
Sbjct: 125 RVVDAVISDMLHKATGIRIRDHALSMELCASAL 157


>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 128 QMLQRGQLEAGQSQEHHQ 75
           ++LQ+G  + G+ + HHQ
Sbjct: 86  EILQKGDFQVGEKERHHQ 103


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 459 SISCFTSQFLPVYVTGQAHL*LSAVFIHLPGPQRPGRHDSPILSQLLPPKP 307
           S+SC    +LP+  T       S + ++     RP    SP +  L PP P
Sbjct: 203 SLSCSPEPYLPLSPTRSPARTPSPIRLYSSDALRPQSPLSPSVEYLTPPNP 253


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 192 ARAMMFFSSLPSISMLIHPTKPDAP 118
           A+ + FF++   ISM+IHP  P AP
Sbjct: 93  AKELPFFAA--GISMVIHPRNPMAP 115


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
 Frame = +2

Query: 5   NSGPF-IAESPDQWTVLELNQPLYIGGVPDFDQLPIDLAGASGFVGCISMLILGNEEKNI 181
           N  P+ +  S D+W  L          V +   +P+  A  +  +  +   +   +  + 
Sbjct: 245 NGSPYSLLLSDDRWEYLASLFTSNFTAVHNIPSVPLLHALLAAGLSSLKTPLCYLDANDD 304

Query: 182 MALALEKENVQNCFTCAPNLCLNN---GVCQEALTEHGYV-CLCAPGFGGNNC 328
             LAL+ + V+ C  C P  CLN+    +    +T+   V  L   G   +NC
Sbjct: 305 NPLALQSQTVKQCPVCTP--CLNDLGKALPYAHITQSAIVDSLTGEGLDSDNC 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,181
Number of Sequences: 5004
Number of extensions: 45668
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)