Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_D01
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    29   0.47 
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   2.5  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   4.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   7.6  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 46  FFEWEIITLNSVSIVISILFD*IS-LLFIMFVCLISSVVIYYRKRYISSELNL 201
           +  WE  ++NSVS  IS  F  +S  LFI+F C    +V YY  R +S+   L
Sbjct: 96  YLSWE--SMNSVSCSISKRFGTLSGALFILFSCAQFHLV-YYMSRPLSNIFGL 145


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 43  YFFEWEIITLNSVSIVISILFD*ISLLFIMFVCLISSVVI 162
           Y+ +WEII  ++++ V   L     LLF++ +  I  V +
Sbjct: 271 YYPQWEIIVRSTIANVPLFLISGCILLFLIAIAFIVDVTL 310


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 112 ISLLFIMFVCLISSVVIYY 168
           IS+LF+ F+ L+   VI+Y
Sbjct: 425 ISILFVFFIILVCLAVIFY 443


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 393 CIYFNSNFLNIKLWKMKLYFL 455
           C   N+N  N KLWK++ YFL
Sbjct: 379 CSNTNNNSTN-KLWKIRWYFL 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,501
Number of Sequences: 5004
Number of extensions: 10684
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)