Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C24
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    48   1e-06
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    42   7e-05
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    38   0.001
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   2.2  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    26   5.0  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   8.7  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
 Frame = +3

Query: 264 DHDGYKLANFYGTTEVMADITYYVLETLGQMHLFLTVPIGVPISNNYVYLL-----DENM 428
           D  G +L N YG TE    +T    + L  ++L     +GVP+ +  + ++     D   
Sbjct: 493 DFWGERLVNAYGPTEAAIHVTLNPSKALTTVYL-----VGVPLQSATICVVSLPTEDSQP 547

Query: 429 RCVREGEPGEVCVAGFNLARGYVRGKD--PHRFIHNPHNTHPNFAKLYRTGDFGILDKG 599
             + EG  GEVC+AG  L+ GY+   +     F+   +N       +YRTGD G +  G
Sbjct: 548 HVLHEGFLGEVCIAGPQLSSGYINRPEINAKAFVEVQYNEQT--LSIYRTGDLGRIING 604



 Score = 35.5 bits (78), Expect = 0.006
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
 Frame = +3

Query: 240  LKFFQYFGDHDGYKLANFYGTTEVMADITYYVLETLGQMHLFLTVP-------IGVPISN 398
            L+ F   G+    +L N +G T V+ +       T+G    F  VP       IG P  N
Sbjct: 2983 LRVFITGGEQIKQELLNIWGDTRVLYNFWGPTELTIGAS-AFRKVPKNAKVSNIGPPFPN 3041

Query: 399  NYVYLLDENMRC-VREGEPGEVCVAGFNLARGYVRGKDPHRFIHNPHNTHPNFAKLYRTG 575
               Y+L +  +  V  G  GE+C+ G  +A+GY+    P +     +       ++Y TG
Sbjct: 3042 CSTYILSKETKVPVLLGGLGEICMGGNQVAKGYL--NLPEQTDAKFYFDRRFNDRIYHTG 3099

Query: 576  DFGILDK 596
            D G L K
Sbjct: 3100 DLGRLLK 3106


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = +3

Query: 294 YGTTEVMADITYYVLETLGQMHLFLTVPIGVPISNNYVYLLDENMRCVREGEPGEVCVAG 473
           Y  TE    +T   L  L      +  P GV +      +LD+    + +G+ GE+CV G
Sbjct: 306 YAMTEASHQMTTNPLPPLVHKPHSVGKPFGVELK-----ILDQKGNEMPQGKEGEICVRG 360

Query: 474 FNLARGYVRGKDPHRFIHNPHNTHPNFAK--LYRTGDFGILDK 596
            N+ +GY         ++NP     +F K   +RTGD G LDK
Sbjct: 361 INVTKGY---------LNNPAANKSSFTKDRFFRTGDEGKLDK 394


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
 Frame = +3

Query: 282 LANFYGTTEVMADITYYVLETLGQMHLFL-----TVPIGVPISNNYVYLL---DENMRCV 437
           + N YGTTE    ++Y+V+    Q   FL      +P G  + N  + ++   D N  C 
Sbjct: 600 VVNMYGTTETQRSVSYFVVPARSQDQTFLESQKDVIPAGRGMKNVQLLVINRFDTNKIC- 658

Query: 438 REGEPGEVCVAGFNLARGYVRGKD 509
             GE GE+ +    LA GY+ G D
Sbjct: 659 GIGEVGEIYLRAGGLAEGYL-GND 681


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +3

Query: 384  VPISNNYVYLLDENMRCVREGEPGEVCVAGFNLARGYVRGKDPHRFIH-NPHNTHPNFAK 560
            VP+S     +  +     R GE GE+ +     A  + +  DP   +  N  N+      
Sbjct: 1272 VPVSTQLAIVNPDTRELCRVGEYGEIWMRSSANAISFFQSTDPVDMMRFNATNSDGFLGN 1331

Query: 561  LY-RTGDFGIL 590
             Y RTGD G L
Sbjct: 1332 GYVRTGDLGFL 1342


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 424 ICDAFGKVNPVRCVWL 471
           ICDA  +VNP+ C +L
Sbjct: 281 ICDANSRVNPITCEYL 296


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 534 HNTHPNFAKLYRTGDFGILDKGVIL 608
           H  HPN++  Y   +   L+KG ++
Sbjct: 340 HAMHPNYSSRYENSNTPFLNKGTVI 364


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 522 IHNPHNTHPN 551
           IHNPH THP+
Sbjct: 300 IHNPHPTHPS 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,894
Number of Sequences: 5004
Number of extensions: 55108
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)