Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C24
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 48 8e-06
04_04_1635 - 34943881-34945233,34945321-34945524 37 0.011
04_03_0305 - 14125193-14125421,14125666-14127104 32 0.42
02_05_0455 - 29154374-29155136,29155257-29156455,29156904-291570... 31 0.55
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648 29 2.2
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667... 29 3.9
04_01_0367 + 4834602-4835489,4836117-4836644 28 5.1
10_06_0116 + 10945231-10945501,10946018-10946241,10946329-109467... 28 6.8
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 28 6.8
08_01_0432 + 3782594-3783027,3783678-3783759,3784067-3784117,378... 27 8.9
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 27 8.9
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 47.6 bits (108), Expect = 8e-06
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Frame = +3
Query: 192 LKLWVCSGETLSRDLALKFFQYFGDHDGYKLANFYGTTEVMADITYY---VLETLGQMHL 362
LK+ + SGE LS L + + + + N YGTTEV D T++ L L +
Sbjct: 288 LKMLIFSGENLSILLWKRVHEILPETT---IVNLYGTTEVSGDCTFFDCTDLPILLKREE 344
Query: 363 FLTVPIGVPISNNYVYLLDENMRCVREGEPGEVCVAGFNLARGYVRGKDPHRFIHNPHNT 542
+VPIG PISN V + + + GE+ V G L GY+ + + H
Sbjct: 345 LTSVPIGFPISNCEVCIATD----AEVADEGEMHVTGACLFAGYL-----EESMASNHTE 395
Query: 543 HPNFAKLYRTGDF 581
+ YRTGDF
Sbjct: 396 DNGSSTYYRTGDF 408
>04_04_1635 - 34943881-34945233,34945321-34945524
Length = 518
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 411 LLDENMRCVREGEPGEVCVAGFNLARGYVRGKDPHRFIHNPHNTHPNFA-KLYRTGDFGI 587
+LDE R V G+ GEVCV G N+ GY +G NP F + TGD G+
Sbjct: 346 ILDEEGRRVEAGKSGEVCVRGANVTSGY-KG--------NPEANEAAFRFGWFHTGDIGV 396
Query: 588 LDK 596
+D+
Sbjct: 397 VDE 399
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 31.9 bits (69), Expect = 0.42
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = +3
Query: 192 LKLWVCSGETLSRDLALKFFQYFGDHDGYKLANFYGTTEVMADITYYVLETLGQMHLFLT 371
LK + + L+ DL F + F G ++ YG TE IT G H+
Sbjct: 313 LKSVMTAAAPLAPDLLAAFQRKF---PGVQVEEAYGLTEHSC-ITLTHAAGDGHGHVAKK 368
Query: 372 VPIGVPISNNYVYLLDENM-RCVREGEPGEVCVAGFNLARGYVRGKD 509
+G + N V +D + R + PGE+CV ++ +GY + K+
Sbjct: 369 SSVGFILPNLEVKFVDPDTGRSLPANTPGELCVRSQSVMQGYYKRKE 415
>02_05_0455 -
29154374-29155136,29155257-29156455,29156904-29157011,
29157129-29157314,29157761-29157859,29159613-29159773,
29160856-29160913
Length = 857
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 181 GLNAGSKDRYKRIERSRVGTNTKRRTSCSTKTLTSFCGSLVVSLDKITNDLPCI 20
GL GS + R++ +R SC K +S C L + LDK+++ LP I
Sbjct: 78 GLKIGSHSSWME-NRNKEDMGPSQRNSCP-KVHSSMCSELTMMLDKVSSILPLI 129
>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
Length = 587
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 426 MRCVREGEPGEVCVAGFNLA---RGYVRGKDPHRFIHNPHNTHPNFAKLYRTGDFGILDK 596
+R EG P V F A R + KDP + + +P +T KL T F LDK
Sbjct: 251 VRVTPEGSPFTSIVQVFAAAARKRSLKQPKDPKQDLFDPPHTSAIVTKLAHTDQFRCLDK 310
Query: 597 GVIL 608
I+
Sbjct: 311 AAIV 314
>08_02_0851 -
21866088-21866210,21866311-21866413,21866531-21866744,
21866877-21867075,21867171-21868151
Length = 539
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 447 EPGEVCVAGFNLARGYVRGKDPHRFIHNPHNTHPNFAK--LYRTGDFGILD 593
+PGE+C+ G + +GY ++NP T K TGD G +D
Sbjct: 380 QPGEICIRGKQIMKGY---------LNNPEATEKTIDKDGWLHTGDIGFVD 421
>04_01_0367 + 4834602-4835489,4836117-4836644
Length = 471
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 521 EAMRIFTAH-ISSSKIETSHTHLTGFTFPNASHILIQKVNV 402
EA RI H + S + ++ + GF P SHI++ ++ +
Sbjct: 358 EAFRIHPYHPFNPSHVAIANITIAGFMIPKGSHIILSRIGL 398
>10_06_0116 +
10945231-10945501,10946018-10946241,10946329-10946725,
10946804-10946893,10947118-10947239,10947390-10947428
Length = 380
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 109 RTSCSTKTLTSF-CGSLVVSLDKITNDLPCIN 17
R+SC T++ F CGS+ + ++K+ DLP +
Sbjct: 20 RSSCDTESWECFQCGSINLPVEKLLFDLPAFH 51
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 27.9 bits (59), Expect = 6.8
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Frame = +3
Query: 294 YGTTEVMADITYYVLETLGQMHLFLTVPIGVPISNNYVYLLD-ENMRCVREGEPGEVCVA 470
YG TE I+ E GQ F + G +S ++D + ++ + + GE+CV
Sbjct: 382 YGMTETCGIISLEYPEK-GQAREFGST--GTLVSGVEAKIVDIKTLKHLPPNQVGEICVR 438
Query: 471 GFNLARGYVRGKDPHRFIHNPHNTHPNFAKLYRTGDFGILDKGVILY 611
G N+ +GY F H TGD G D G L+
Sbjct: 439 GPNVMQGYFNNVQATEFTIKQGWLH--------TGDLGYFDGGGQLF 477
>08_01_0432 +
3782594-3783027,3783678-3783759,3784067-3784117,
3784279-3784514,3785008-3785058,3790905-3791106,
3791695-3791977,3792617-3792687
Length = 469
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = -3
Query: 590 QDAEITSAIQFGKIRVSVMRVMDEAMRIFTAHISSSKIETSHTHLTGFTFPNASHILIQK 411
Q+ EIT +R+S ++ +R FTA+ ++ + H TG + P++S IL Q+
Sbjct: 271 QEEEITEIAGVSCLRLSTAANLEAGLRDFTAY-ANPHHRSRHAVTTG-SVPHSSGILRQQ 328
Query: 410 V 408
+
Sbjct: 329 I 329
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -3
Query: 557 GKIRVSVMRVMDEAMRIFTAHI-SSSKIETSHTHL--TGFTFPNASHILIQKVN 405
GKI V + V DE +R+FT+ + + +K H + F+F + L Q+V+
Sbjct: 351 GKINVKIPTVPDELIRLFTSQVHNDAKYFRKHIRYFNSHFSFTSLGVTLDQRVS 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,026,678
Number of Sequences: 37544
Number of extensions: 349627
Number of successful extensions: 848
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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