Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C24
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 46 3e-05
SB_57182| Best HMM Match : AMP-binding (HMM E-Value=0) 34 0.11
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 33 0.18
SB_13119| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_39565| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13) 29 2.3
SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37) 29 3.0
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 29 3.0
SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0) 29 3.0
SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_45441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041) 28 5.2
SB_1343| Best HMM Match : IBB (HMM E-Value=2.3) 28 5.2
SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09) 28 6.9
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 45.6 bits (103), Expect = 3e-05
Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Frame = +3
Query: 183 LKCLKLWVCSGETLSRDLALKFFQYFGDHDGYKLANFYGTTEVMADITYYVLETLGQMHL 362
L LKL + GE DL DG L N YG TE V+ T ++
Sbjct: 291 LNRLKLIILGGEACGEDLVAWA-------DGRMLINSYGPTETT------VVATTCEIKR 337
Query: 363 FLTVPIGVPISNNYVYLLDENMRCVREGEPGEVCVAGFNLARGY--VRGKDPHRFIHNPH 536
+ IG N ++LD + V + GE+C++G LARGY + K +F+ H
Sbjct: 338 GKKITIGRAFGNYNAHILDSILVDVEGEKEGELCISGKCLARGYRNLPEKTKQQFV--DH 395
Query: 537 NTHPNFAKLYRTGD 578
H ++YRTGD
Sbjct: 396 QLH---GRIYRTGD 406
>SB_57182| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 566
Score = 33.9 bits (74), Expect = 0.11
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Frame = +3
Query: 192 LKLWVCSGETLSRDLALKFFQYFGDHDGYKLANFYGTTEVMADITYYVLETLGQMHLFL- 368
+K+ + SG + D +K + G + YG +E M T +++ + Q L
Sbjct: 319 IKMAIFSGRCYTPDEIVKTMEAL---PGANALHIYGASEAMKIATRFIIRSALQDKASLC 375
Query: 369 --TVPIGVPISNNYVYLLDENMRCVREGEPGEVCVAGFNLARGYVRGKDPHRFIHNPHNT 542
T+ GV + ++D+ V GE GE+CV + GY+ ++ + + +P
Sbjct: 376 KLTLSPGVELK-----IIDDKGCLVPRGEMGEICVRNECVFMGYLGQEETTKKVKSPDG- 429
Query: 543 HPNFAKLYRTGDFGILDK 596
R GD G++D+
Sbjct: 430 ------WIRMGDLGVMDE 441
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 163 KDRYKRIERSRVGTNTKRRTSCSTKTLTSFC 71
+++ K++E V NTK++TSC+ K T +C
Sbjct: 13 EEQLKKMEEDSVPKNTKKQTSCAMKKFTEWC 43
>SB_13119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 163 KDRYKRIERSRVGTNTKRRTSCSTKTLTSFC 71
+++ K++E V NTK++TSC+ K T +C
Sbjct: 13 EEQLKKMEEDSVPKNTKKQTSCAMKKFTEWC 43
>SB_39565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Frame = +3
Query: 405 VYLLDENMRCVREGEPGEVCVAGFNLARGYV-------RGKDPHRFIH 527
V ++D N + V GEPGE+C + GY+ R K P ++H
Sbjct: 52 VKIVDANNKVVPRGEPGEICCRSECVFLGYLGNLEATSRAKSPQGWLH 99
>SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)
Length = 874
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 378 IGVPISNNYVYLLD-ENMRCVREGEPGEVCVAGFNLARGYVRGKDPHRFIHNPHNTHPNF 554
+GV + N ++D + V +G+ GE+C+ G + +GY+ K+P T +
Sbjct: 206 VGVLLPNLECKIIDLSSGEEVEQGKEGEICIRGPTVMKGYL--KNPEA----TARTLDSE 259
Query: 555 AKLYRTGDFGILDKGVILY 611
L+ TGD G D+G Y
Sbjct: 260 GWLH-TGDIGHCDQGDFFY 277
>SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37)
Length = 497
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 390 ISNNYVYLLDENMRCVREGEPGEVCVAGFNLARGYV 497
+ N V ++ + + VR G PGE+CV L + YV
Sbjct: 308 LPGNEVKIVGDEDKIVRRGTPGEICVRTAMLFQEYV 343
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 29.1 bits (62), Expect = 3.0
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = -3
Query: 539 VMRVMDEAMRIFTAHISSSKIE-TSHT-HLTGFTFPNASHILIQKVNVIVRYRYTNRYCK 366
V R M A R T H++ + T HT H+TG T H L + R+T +
Sbjct: 21 VTRYMSHATRQ-TLHVTRYMSQATCHTLHVTGNTSHATCHTLHVTRYMSHATRHTLHVTR 79
Query: 365 K*MHLAERLQNVIRDVSHDFCGTVEVS 285
H Q+V R +SH C T+ V+
Sbjct: 80 YMSHATCHRQHVTRYMSHATCHTLHVT 106
>SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 549
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 390 ISNNYVYLLDENMRCVREGEPGEVCVAGFNLARGYV 497
+ N V ++ + + VR G PGE+CV L + YV
Sbjct: 360 LPGNEVKIVGDEDKIVRRGTPGEICVRTAMLFQEYV 395
>SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 351 QMHLFLTVPIGVPISNNYVYLLD-ENMRCVREGEPGEVCVAGFNLARGYV 497
QM + +G P+ V L+D M GE+C+ G N+ +GY+
Sbjct: 133 QMRHGMLCHVGAPVPCATVKLVDVPEMDYYASNNQGEICIRGRNVFKGYL 182
>SB_45441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 378 IGVPISNNYVYLLD-ENMRCVREGEPGEVCVAGFNLARGY 494
+G N ++D E+ V PGE+C G+N+ +GY
Sbjct: 52 VGTMAPNVEAKIIDSEHGNVVPINTPGEICFRGYNVMQGY 91
>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
Length = 339
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 378 IGVPISNNYVYLLD-ENMRCVREGEPGEVCVAGFNLARGY 494
+G N ++D E+ V PGE+C G+N+ +GY
Sbjct: 174 VGTMAPNVEAKIIDSEHGNVVPINTPGEICFRGYNVMQGY 213
>SB_1343| Best HMM Match : IBB (HMM E-Value=2.3)
Length = 556
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = -1
Query: 235 KSLLRVSPEQTHNLRHLSGLNAGSKDRYK-RIERSRVG-TNTKRRTSCSTKTLTSFCGSL 62
+SLL E H + +D R+ +G TN S K T CG L
Sbjct: 388 RSLLFCQAEDVHESINRRTCTQAERDLLLLRVRFGGLGITNPADEASLKFKASTKVCGPL 447
Query: 61 VVSLDKITNDLPC 23
+ + T++LPC
Sbjct: 448 AEQIKQQTHELPC 460
>SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)
Length = 490
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 294 YGTTEVMADITYYVLETLGQMHLFLTVPIGVPISNNYVYLLD-ENMRCVREGEPGEVCVA 470
YG TE A T ++ +G H F V G P+ + L+D +M + GE+C
Sbjct: 245 YGQTETTAAAT---IQLVGD-HTFGHV--GPPMPCTKIKLVDVPDMNYFAKDGKGEICFY 298
Query: 471 GFNLARGYVRGKDPHR 518
G N+ +GY+ DP +
Sbjct: 299 GPNVFKGYLH--DPEK 312
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,107,698
Number of Sequences: 59808
Number of extensions: 416424
Number of successful extensions: 1094
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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